Table 2.
List of ncRNA-target and the type of interaction present in the network
| ncRNA | Direct target | Direct effect* | PMID |
|---|---|---|---|
| BCAR4 | HK2 | pos | 28963395 |
| BCAR4 | PFKFB3 | pos | 28963395 |
| BCAR4 | PNUTS | pos | 25416949 |
| BCAR4 | SNIP1 | pos | 25416949 |
| Eleanor | ESR1 | pos | 25923108 |
| Eleanor | ESR1 | pos | 31439835 |
| Eleanor | FOXO3 | pos | 31439835 |
| H19 | DNMT3B | pos | 31340867 |
| H19 | HIF1A | pos | 29106390 |
| H19 | let-7 | neg | 28102845 |
| H19 | let-7 | neg | 29106390 |
| H19 | LIN28 | pos | 28102845 |
| H19 | MIR675 | neg | 30803129 |
| H19 | PDK1 | pos | 29106390 |
| H19 | SAHH | neg | 31340867 |
| H19 | BECN1 | pos | 31340867 |
| HOTAIR | BRD4 | pos | 28846832 |
| HOTAIR | EZH2 | pos | 30764859 |
| HOTAIR | HBXIP | pos | 26719542 |
| HOTAIR | KDM1A | pos | 26719542 |
| HOTAIR | NLK | neg | 30764859 |
| LINC00511 | EZH2 | pos | 31395854 |
| LINC00511 | MIR185 | neg | 30482236 |
| LINC00511 | CDKN1B | neg | 31395854 |
| LINC00511 | E2F1 | pos | 30482236 |
| LINK-A | AKT1 | pos | 28218907 |
| LINK-A | BRK | pos | 26751287 |
| LINK-A | LRRK2 | pos | 26751287 |
| LINK-A | HIF1A | pos | 26751287 |
| LINK-A | PIP3 | pos | 28218907 |
| MALAT1 | ID4 | pos | 28652379 |
| MALAT1 | MIR216 | neg | 30982780 |
| MALAT1 | p53 | pos | 28652379 |
| MALAT1 | PNPO | pos | 30982780 |
| MALAT1 | SRSF1 | pos | 28652379 |
| MALAT1 | TEAD1 | neg | 30349115 |
| MALAT1 | VEGFA | pos | 28652379 |
| mir-100 | BMPR2 | neg | 25217527 |
| mir-200b | ARHGAP18 | neg | 28619708 |
| mir-200b | ZEB1 | neg | 25972084 |
| mir-200b | ZEB2 | neg | 25972084 |
| mir-200b | Sec23a | neg | 25401471 |
| mir-200b | ZEB2 | neg | 25401471 |
| mir-200c | OBR | neg | 25840984 |
| mir-200c | ZEB1 | neg | 27402080 |
| mir-200c | Sec23a | neg | 25401471 |
| mir-200c | ZEB2 | neg | 25401471 |
| mir-200c | PDGFRB | neg | 27402080 |
| mir-203a | Axl | neg | 26292363 |
| mir-203a | ONECUT2 | neg | 31118200 |
| mir-203a | RUNX2 | neg | 25634212 |
| mir-203a | SLUG | neg | 26292363 |
| mir-203a | TP63 | neg | 26292363 |
| mir-205 | Ubc13 | neg | 25476932 |
| mir-205 | ZEB1 | neg | 25476932 |
| mir-205 | ZEB1 | neg | 26292362 |
| mir-205 | ZEB2 | neg | 26292362 |
| MIR2052HG | EGR1 | pos | 30944027 |
| MIR2052HG | ESR1 | pos | 27758888 |
| MIR2052HG | PRKCB | neg | 30944027 |
| MIR2052HG | AKT1 | pos | 27758888 |
| MIR2052HG | FOXO3 | neg | 27758888 |
| MIR2052HG | ESR1 | pos | 30944027 |
| MIR2052HG | LMTK3 | pos | 30944027 |
| mir-23b | AMOTL1 | neg | 26178901 |
| mir-23b | PLAU | neg | 26178901 |
| mir-23b | SLC6A14 | neg | 31269432 |
| mir-25 | BTG2 | neg | 29310680 |
| mir-25 | NCOA3 | neg | 28920955 |
| mir-25 | AKT1 | pos | 29310680 |
| mir-25 | MAPK | pos | 29310680 |
| mir-25 | CGAS | neg | 28920955 |
| mir-27b | ENPP1 | neg | 26065921 |
| mir-27b | PDHX | neg | 30012170 |
| mir-27b | ABCG2 | neg | 26065921 |
| mir-29b | CDC42 | neg | 25622979 |
| mir-29b | Hsp47 | neg | 25744716 |
| mir-100 | SMARCA5 | neg | 25217527 |
| mir-100 | SMARCD1 | neg | 25217527 |
| mir-100 | mTOR | neg | 28741069 |
| mir-100 | VEGFA | neg | 28741069 |
| mir-10b | BCL2L11 | neg | 26359455 |
| mir-10b | DYRK1A | neg | 27569213 |
| mir-10b | HOXD10 | neg | 25428807 |
| mir-10b | HOXD10 | neg | 26359455 |
| mir-10b | HOXD10 | neg | 27569213 |
| mir-10b | KLF4 | neg | 25428807 |
| mir-10b | PTEN | neg | 27113763 |
| mir-10b | PTEN | neg | 27569213 |
| mir-10b | Tbx5 | neg | 27569213 |
| mir-10b | AKT1 | pos | 27113763 |
| mir-125a | HDAC5 | neg | 25531695 |
| mir-125a | HER2 | neg | 30068375 |
| mir-125a | HER3 | neg | 30068375 |
| mir-125b | HER2 | neg | 25388283 |
| mir-125b | HER2 | neg | 30068375 |
| mir-125b | HER3 | neg | 30068375 |
| mir-146a | FN1 | neg | 30622118 |
| mir-146a | IRAK1 | neg | 25712342 |
| mir-146a | TRAF6 | neg | 25712342 |
| mir-146a | NF-KB1 | neg | 25712342 |
| mir-181a | MMP-14 | neg | 25977338 |
| mir-181a | TUSC3 | neg | 28288641 |
| mir-182 | Palladin | neg | 27641360 |
| mir-182 | SMAD7 | neg | 27996004 |
| mir-196a | HOXB7 | neg | 26180042 |
| mir-196a | SPRED1 | neg | 29685157 |
| mir-196a | HER2 | neg | 26180042 |
| mir-200a | Sec23a | neg | 25401471 |
| mir-200a | ZEB1 | neg | 25972084 |
| mir-200a | ZEB2 | neg | 25401471 |
| mir-200a | ZEB2 | neg | 25972084 |
| mir-200b | ARHGAP18 | neg | 28619708 |
| mir-200b | ZEB1 | neg | 25972084 |
| mir-200b | ZEB2 | neg | 25972084 |
| mir-29b | PIK3R1 | neg | 25622979 |
| mir-29c | Hsp47 | neg | 25744716 |
| mir-29c | TET2 | neg | 29109788 |
| mir-30a | CDH11 | neg | 30042152 |
| mir-30a | ITGA5 | neg | 30042152 |
| mir-30a | ITGB3 | neg | 30042152 |
| mir-30a | ZEB2 | neg | 29666469 |
| mir-30e | CDH11 | neg | 30042152 |
| mir-30e | EIF5A2 | neg | 29560860 |
| mir-30e | ITGA5 | neg | 30042152 |
| mir-30e | ITGB3 | neg | 30042152 |
| mir-30e | SCA1 | neg | 29560860 |
| mir-30e | TUSC3 | neg | 28288641 |
| mir-34a | AGO2 | neg | 29941603 |
| mir-34a | SRC | neg | 26676753 |
| mir-34a | C22ORF28 | neg | 29187905 |
| mir-34a | eEF2K | neg | 29748184 |
| mir-34a | FOXM1 | neg | 29748184 |
| mir-34a | GFRA3 | neg | 28356515 |
| mir-34a | MCT-1 | neg | 30885232 |
| mir-34a | NOTCH1 | neg | 25368020 |
| mir-34a | tRNAiMET | neg | 29941603 |
| mir-9 | ONECUT2 | neg | 31118200 |
| mir-9 | STARD13 | neg | 27402080 |
| mir-9 | PDGFRB | pos | 27402080 |
| mir-96 | FOXO1 | neg | 27170187 |
| mir-96 | FOXO1 | neg | 29792692 |
| mir-96 | Palladin | neg | 27641360 |
| NEAT1 | FOXN3 | pos | 28805661 |
| NEAT1 | GATA3 | neg | 28805661 |
| NEAT1 | JAM1 | neg | 25417700 |
| NEAT1 | MIR204 | neg | 30803129 |
| NEAT1 | SIN3A | pos | 28805661 |
| UCA1 | MIR122 | neg | 29669595 |
| UCA1 | SLUG | pos | 29774079 |
*pos positive interaction, activation, neg negative interaction, repression