Table 1.
Genomic characteristics MERS-CoV isolates
|
Isolate |
Strain name |
Clinical specimen accession |
Isolate accession |
Clade |
Lineage |
Genomic deletions |
|---|---|---|---|---|---|---|
|
Hu/Khobar_KSA_6736_2015 |
KT806048 (Full genome) |
B |
5 |
Full length – 1 nt difference between clinical specimen and tissue-culture isolate |
||
|
Hu/Hofuf_KSA_11442_2015 |
KT806025 (Spike) |
5 |
Full length |
|||
|
Hu/Hofuf_KSA_11767_2015 |
KT806031 (Spike) |
5 |
Full length |
|||
|
Hu/Hofuf_KSA_11002_2015 |
KT806046 (Full genome) |
5 |
Full length |
|||
|
Hu/Hofuf_KSA_11401_2015 |
KT806024 (Spike) |
5 |
Full length |
|||
|
Hu/Riyadh_KSA_2959_2015 |
KT026453 (Full genome) |
5 |
Δ9 nt 5’ UTR, detected in clinical specimen and tissue-culture isolate |
|||
|
Hu/Riyadh_KSA-4050_2015 |
KT026454 (Full genome) |
5 |
Δ3 nt ORF1a, Δ1AA NSP2 |
|||
|
Hu/Aseer_KSA_RS924_2015 |
KT805992 (Spike) |
4 |
Δ41 nt ORF3 |
|||
|
Previously described |
Hu/Florida/USA-2_Saudi Arabia_2014 |
n/a |
1 |
Full length |
||
|
Hu/England-Qatar_2012 |
n/a |
4 |
Full length |
|||
|
Hu/Jordan_N3_2012 |
n/a |
A |
A |
Full length |