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. 2020 Mar 18;15(3):e0230496. doi: 10.1371/journal.pone.0230496

Table 1. Primers and probes used in this study.

Application Species Oligonucleotide sequence Target, size (bp)
TaqMan Bison priscus F, CCCCAGCAAATCCACTCAATACA CYTB, 81
R, TTGATCGTAAAATTGCGTATGCAAATAAG
Probe, CCTCCCCACATCAAAC
TaqMan Bison schoetensacki F, CTACTAGTACTATTCGCACCCGA CYTB, 75
R, AGGCGTGTTAAGTGGATTTGCT
Probe, CCTCCTCGGAGACCCAG
TaqMan Bos primigenius F, CCAGCCAATCCACTCAACACA CYTB, 79
R, TTGATCGTAAGATTGCGTATGCAAA
Probe, CCCCTCACATCAAACC
TaqMan Rangifer tarandus F, TCACATCTGTCGAGACGTCAATT CYTB, 61
R, TGCTCCGTTGGCATGTATGTA
Probe, TGGCTGAATCATCCG
TaqMan Cervus elaphus F, CATGTAGGGCGAGGCCTGTA CYTB, 66
R, AACTACTCCGATGTTTCACGTCTCT
Probe, ACGGATCATATACTTTTC
TaqMan Crocuta crocuta F, TGGCGAGACATTATCCGAGAA COX3, 68
R, CGCAGCCCCTTTTGTACAGT
Probe, CACATTCCAGGGACACC
PCR-sequencing Bison priscus F, CCAAACCCTTAAACTATCCCTC ND5, 74
R, CGAATAGTGCTACTGGGACA
PCR-sequencing Bison schoetensacki F, CTACTAGTACTATTCGCACCCGA CYTB, 75
R, AGGCGTGTTAAGTGGATTTGCT
PCR-sequencing Rangifer tarandus F, ATCCGATACAATAACAGCAT CYTB, 65
R, TTCAGCCATAATTGACGTCT

Oligonucleotides sequences are displayed in the 5’-3’ orientation. F, forward PCR primer; R, reverse PCR primer; Probe, TaqMan minor groove binder (MGB) probe labeled with 6-carboxyfluorescein (FAM). The last column indicates the region of the mitochondrial genome amplified with each primer set and the size of the amplicon.