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. Author manuscript; available in PMC: 2021 Mar 15.
Published in final edited form as: Dev Biol. 2019 Dec 17;459(2):161–180. doi: 10.1016/j.ydbio.2019.12.003

Figure 3: Identification of NF-Y and/or TALE-dependent genes in zebrafish.

Figure 3:

(A) Read counts for the RNA-seq analysis. (B, C) Histograms, scatter plots, and Spearman’s rank correlation coefficient comparing each biological replicate of NF-YA DN with GFP (B) or PBCAB with GFP (C). (D) Venn diagram showing upregulated genes (p-adj ≤ 0.01; FC ≥ 1.5) in embryos injected with PBCAB or NF-YA DN. (E-I) GO terms associated with genes upregulated (p-adj ≤ 0.01, FC ≥ 1.5) by PBCAB (E), upregulated by NF-YA DN (F), upregulated by both PBCAB and NF-YA DN (G), downregulated exclusively by PBCAB (H) or downregulated exclusively by NF-YA DN (I). In E-I, blue bars correspond to transcription-related, green to embryogenesis-related, orange to homeodomain-related, yellow to cilia-related, and gray bars to other ontologies.