Table 2.

eQTN for genes showing the strongest evidence of differential expression between affected and unaffected-relatives subjects for the phenotype specific to each linked region

Linked region	Affected phenotype	SNP	Gene expression	ORj	P nominal	#SNPs	Bonfk	Location
3q21	CL	rs2877822:C > Ta	ITGB5	0.87	0.0370	16	0.592	intron 2 MUC13
		rs10934702:C > Tb	ITGB5	0.81	0.0048		0.077	0.5 kB 5′ MUC13
4q34	BD	rs13130930:C > Tc	SPCS3	0.72	0.0123	17	0.209	5 kB 5′
		rs7694145:A > Gd	SPCS3	0.66	0.0016		0.027	35 kB 3′
		rs13144122:A > Ce	SPCS3	0.73	0.0128		0.218	40 kB 3′
6p22	SZ	rs9396710:T > Cf	ATXN1, HS.408455	0.54	0.0065	94	1	8 kB 5′
		rs493352:T > Cg	ATXN1, HS.408455	0.75	0.0251		1	intron 3
8p21	CL	rs1908916:T > Gh	FZD3	0.76	0.0071	13	0.092	5 kB 5′
		rs1946583:T > Ci	FZD3	0.76	0.0040		0.052	1 kB 5′
8p11	BD	na	GOLGA7	na	ns	15	na
13q11	CL	na	HS.121655	na	ns	3	na
13q11	SZ	na	HS.121655	na	ns	3	na
15q13	BD	na	GOLGA8F	na	na	na	na
16p12	BD	na	CDR2	na	ns	3	na
18q21	BD	na	C18orf12	na	na	na	na

^aNC_000003.11:g.124645034 C > T

^bNC_000003^.11:g.124653868 C > T

^cNC_000004.11:g.177235586 C > T

^dNC_000004.11:g.177285894 A > G

^eNC_000004.11:g.177292032 A > C

^fNC_000006.11:g.16772207 T > C

^gNC_000006.11:g.16744169 T > C

^hNC_000008.10:g.28347283 T > ^G

ⁱNC_000008.10:g.28350753 T > C

^jOdds ratio of the phenotype vs. NARs between the homozygous variant and homozygous reference genotypes

^kBonferroni adjusted for the number of non-redundant SNPs tested in the gene