Supplementary Table 2.

Quality control of RNA-Seq.

Sample	Raw_bases (G)	Raw_reads	Clean_reads	UID_reads	Q20 (%)	Q30 (%)	GC content (%)
AC-16_1	10.89	72582764	54938490	45822902	100	98.6	53.27
AC-16_2	12.6	83976656	63891836	52669992	100	98.55	53.48
AC-16_3	11.07	73782720	54715958	46471218	100	98.55	53.51
T1AM_1	12.27	81782532	63072746	53331582	100	98.55	53.51
T1AM_2	12.96	86400346	64988416	55036614	100	98.5	52.38
T1AM_3	10.87	72460776	55274770	46842470	100	98.6	53.41
H/R_1	13.47	89788652	67835342	56164298	100	98.65	53.53
H/R_2	12.83	85510102	64040788	53620442	100	98.45	53.24
H/R_3	13.88	92549964	70968566	57977662	100	98.5	53.94
H/R+T1AM_1	11.85	79008198	58364134	47963310	100	98.6	52.9
H/R+T1AM_2	12.07	80449148	59323994	48870858	100	98.55	53.4
H/R+T1AM_3	10.66	71073952	52212294	43004914	100	98.6	53.52