Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2020 Mar 19;9(3):giaa021. doi: 10.1093/gigascience/giaa021

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s) 2020. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

PMC Copyright notice

Figure 2: — Dominette de novo assembly. A: Assembly pipeline. N50 is the minimum scaffold/contig length needed to cover 50% of the genome; L50 is the number of contigs required to reach N50. B: Cattle chromosomes painted with assembled contigs. A color shift indicates the switch from one contig to the next or the end of an alignment block. The left half of each chromosome shows UMD3.1.1 contigs while the right shows ARS-UCD1.2. To be conservative, contigs were ordered by UMD3.1.1 assembly positions; where there are conflicts in order between ARS-UCD1.2 and UMD3.1.1, the plot displays a color switch in ARS-UCD1.2. Asterisk indicates within scaffolds assigned to chromosomes.