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. 2020 Mar 13;11:395. doi: 10.3389/fmicb.2020.00395

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Copyright © 2020 Silvestri, Turina, Fiorilli, Miozzi, Venice, Bonfante and Lanfranco.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Phylogenetic analysis and PFAM domains of RdRp proteins. Sequences are discernible by species according to a two-letter prefix and/or a color code: Mo, Magnaporthe oryzae; Nc, Neurospora crassa, Mc, Mucor circinelloides; Sp, Schizosaccharomyces pombe; Cp, Cryphonectria parasitica; gray, Rhizophagus irregularis; red, Gigaspora margarita. Protein ID (NCBI or JGI): MoRdRP1 = XP_003721007.1, MoRdRP2 = XP_003711624.1, MoRdRP3 = XP_003712093.1, NcQDE-1 = EAA29811.1, NcSAD-1 = XP_964248.3, NcRRP-3 = XP_963405.1, SpRDP1 = NP_001342838.1, McRdRP-1 = 111871, McRdRP-2 = 104159, CpRDR1 = 270014, CpRDR2 = 35624, CpRDR3 = 10929, CpRDR4 = 339656. R. irregularis proteins are identified by JGI numeric codes. G. margarita proteins are identified by Venice et al. (2019) annotation code. The numbers at the nodes are bootstrap values (%) for 1000 replications. Tree was rooted using Caenorhabditis elegans RdRP (NCBI Reference Sequence: NP_495713.2). Tree was reshaped on root with Newick Utilities v1.6 and visualized with Evolview v3.