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. Author manuscript; available in PMC: 2021 Mar 18.
Published in final edited form as: Neuron. 2020 Jan 16;105(6):1094–1111.e10. doi: 10.1016/j.neuron.2019.12.027

Key Resources Table

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Chicken anti-GFP Invitrogen Cat #: A10262; RRID: AB_2534023
Rat anti-mCherry Invitrogen Cat #: M11217; RRID: AB_2536611
Bacterial and Virus Strains
AAV1-hSyn-GCaMP6f Penn Vector Core Addgene 100837
AAV1-hSyn-GCaMP6s Penn Vector Core Addgene 100843
AAV8-hSyn-DIO-hM3Dq-mCherry UNC Vector Core Addgene 44361
AAV8-hSyn-DIO-hM4Di-mCherry UNC Vector Core Addgene 44362
AAV1-DIO-ChR2(H134R)-YFP Penn Vector Core Addgene 20298
AAV8-FLEX-TVA-mCherry UNC Vector Core Addgene 38044
SADΔG–EGFP (EnvA) rabies Salk Gene Transfer Targeting and Therapeutics Core Addgene 32635
AAV8-CaMKII-hM3Dq-mCherry Addgene Addgene 50476
Chemicals, Peptides, and Recombinant Proteins
Clozapine-N-Oxide (CNO) NIMH Drug Supply Program Cat# C-929
Compound 21 (C21) Tocris 6422
CNQX Tocris Cat# 0190
D-AP5 Tocris Cat# 0106
Kynurenic Acid Sigma-Aldrich Cat# K3375–5G
Picrotoxin Tocris Cat# 1128
Bicuculline Tocris Cat# 2503
TTX Tocris Cat# 1069
4-AP Sigma-Aldrich Cat# A78403
Cholera Toxin B Subunit B (Recombinant), Alexa Fluor 555 Conjugate Thermo Fisher Cat# 34776
Experimental Models: Organisms/Strains
Mouse: C57BL/6J The Jackson Laboratory RRID: IMSR_JAX:000664
Mouse: Nos1-Cre knockin (B6.129-Nos1tm1(cre)Mgmj/J) The Jackson Laboratory Strain# 017526; RRID: IMSR_JAX:017526
Mouse: vGlut2-ires-Cre (B6J.129S6(FVB)-Slc17a6tm2(cre)Lowl/MwarJ) The Jackson Laboratory Strain# 028863; RRID:IMSR_JAX:028863
Software and Algorithms
MATLAB R2015b, 2019a Mathworks https://www.mathworks.com/products/matlab.html; RRID: SCR_001622
MonkeyLogic Asaad and Eskandar, 2008 http://www.brown.edu/Research/monkeylogic/
MonkeyLogic2 NIMH https://monkeylogic.nimh.nih.gov/
Scanbox Neurolabware https://scanbox.org/
PCA/ICA neuron identification Mukamel et al., 2009 https://github.com/mukamel-lab/CellSort
Glmnet Friedman et al., 2010 https://web.stanford.edu/~hastie/glmnet_matlab/
ImageJ 1.49t NIH https://imagej.nih.gov/ij/; RRID: SCR_003070