Key Resources Table
REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Chicken anti-GFP | Invitrogen | Cat #: A10262; RRID: AB_2534023 |
Rat anti-mCherry | Invitrogen | Cat #: M11217; RRID: AB_2536611 |
Bacterial and Virus Strains | ||
AAV1-hSyn-GCaMP6f | Penn Vector Core | Addgene 100837 |
AAV1-hSyn-GCaMP6s | Penn Vector Core | Addgene 100843 |
AAV8-hSyn-DIO-hM3Dq-mCherry | UNC Vector Core | Addgene 44361 |
AAV8-hSyn-DIO-hM4Di-mCherry | UNC Vector Core | Addgene 44362 |
AAV1-DIO-ChR2(H134R)-YFP | Penn Vector Core | Addgene 20298 |
AAV8-FLEX-TVA-mCherry | UNC Vector Core | Addgene 38044 |
SADΔG–EGFP (EnvA) rabies | Salk Gene Transfer Targeting and Therapeutics Core | Addgene 32635 |
AAV8-CaMKII-hM3Dq-mCherry | Addgene | Addgene 50476 |
Chemicals, Peptides, and Recombinant Proteins | ||
Clozapine-N-Oxide (CNO) | NIMH Drug Supply | Program Cat# C-929 |
Compound 21 (C21) | Tocris | 6422 |
CNQX | Tocris | Cat# 0190 |
D-AP5 | Tocris | Cat# 0106 |
Kynurenic Acid | Sigma-Aldrich | Cat# K3375–5G |
Picrotoxin | Tocris | Cat# 1128 |
Bicuculline | Tocris | Cat# 2503 |
TTX | Tocris | Cat# 1069 |
4-AP | Sigma-Aldrich | Cat# A78403 |
Cholera Toxin B Subunit B (Recombinant), Alexa Fluor 555 Conjugate | Thermo Fisher | Cat# 34776 |
Experimental Models: Organisms/Strains | ||
Mouse: C57BL/6J | The Jackson Laboratory | RRID: IMSR_JAX:000664 |
Mouse: Nos1-Cre knockin (B6.129-Nos1tm1(cre)Mgmj/J) | The Jackson Laboratory | Strain# 017526; RRID: IMSR_JAX:017526 |
Mouse: vGlut2-ires-Cre (B6J.129S6(FVB)-Slc17a6tm2(cre)Lowl/MwarJ) | The Jackson Laboratory | Strain# 028863; RRID:IMSR_JAX:028863 |
Software and Algorithms | ||
MATLAB R2015b, 2019a | Mathworks | https://www.mathworks.com/products/matlab.html; RRID: SCR_001622 |
MonkeyLogic | Asaad and Eskandar, 2008 | http://www.brown.edu/Research/monkeylogic/ |
MonkeyLogic2 | NIMH | https://monkeylogic.nimh.nih.gov/ |
Scanbox | Neurolabware | https://scanbox.org/ |
PCA/ICA neuron identification | Mukamel et al., 2009 | https://github.com/mukamel-lab/CellSort |
Glmnet | Friedman et al., 2010 | https://web.stanford.edu/~hastie/glmnet_matlab/ |
ImageJ 1.49t | NIH | https://imagej.nih.gov/ij/; RRID: SCR_003070 |