Table 3.
Cell Typea | Methods | AUC (%) |
---|---|---|
hct116 | Azimuthb | 74.1 |
DeepCRISPR (pt+aug CNN)c | 87.4 | |
sgRNA-PSMd | 91.7 | |
Retrained sgRNA-PSMe | 74.0 | |
Hela | Azimuthb | 67.5 |
DeepCRISPR (pt+aug CNN)c | 78.2 | |
sgRNA-PSMd | 82.8 | |
Retrained sgRNA-PSMe | 72.1 | |
hl60 | Azimuthb | 79.2 |
DeepCRISPR (pt+aug CNN)c | 73.9 | |
sgRNA-PSMd | 77.6 | |
Retrained sgRNA-PSMe | 83.7 |
The cell type of the independent test dataset.
Results reported in Chuai et al.46
Results reported in Chuai et al.46
The sgRNA-PSM predictor trained with the dataset reported in Chuai et al.;46 see Equations 9 and 10 with k = 4, m = 2, = 9, R = 0.05, F = 2,300.
The sgRNA-PSM predictor trained with each of the three datasets (hct116, hela, and hl60).