Table 1.
Quantification of phospholipid species in human nuclear membranes (hNM) by liquid-state NMR.
Phospholipida | 31P-chemical shift (ppm) from literature | 31P-chemical shift hNM (ppm)c | % mold |
---|---|---|---|
TPP (reference) | −17.95 | ||
PC | −0.84 ± 0.01 | −0.84 ± 0.01 | 46 ± 4 |
EPC | −0.78 ± 0.01 | −0.77 ± 0.01 | 15 ± 2 |
LPCe | −0.28 ± 0.04 | −0.22 ± 0.01 | 0 ± 1 |
PI | −0.36 ± 0.03 | −0.20 ± 0.06 | 11 ± 1 |
SM | −0.07 ± 0.03 | −0.10 ± 0.01 | 3 ± 2 |
PSg | −0.05 ± 0.01 | −0.06 ± 0.01 | 4 ± 1 |
PE | 0.04 ± 0.10 | 0.03 ± 0.01 | 9 ± 2 |
LPIe | 0.10 ± 0.04 | 0.03 ± 0.01 | 4 ± 1 |
CLg | 0.18 ± 0.01 | 0.06 ± 0.01 | 1 ± 1 |
PA | 0.23 ± 0.04 | 0.33 ± 0.02 | 6 ± 1 |
PGf | 0.47 ± 0.01 | 0.57 ± 0.01 | 0 ± 1 |
aTPP: Triphenylphosphate (internal reference), PC: phosphatidylcholine, EPC: ether phosphatidylcholine, LPC: lysophosphatidylcholine, PI: phosphatidylinositol, LPI: lysophosphatidylinositol SM: sphingomyelin, PS: phosphatidylserine, PE: phosphatidylethanolamine, CL: cardiolipin, PA: phosphatitic acid, PG: phosphatidylglycerol.
bChemical shifts of individual phospholipids in the MeOD/CDCl3 (from Kaffarnik et al. and Meneses & Glonek18,19). Average over the 2 reference values. Reference H3PO4 (0 ppm).
cChemical shifts of individual phospholipids in the nuclear lipid extract mixture (4 mg of phospholipids solubilized in of 500 µL of MeOD/CDCl3 (1:2) + 30 µl of 0.2 M EDTA-D2O pH 6). Chemical shifts were referenced with respect to the internal standard TPP: -17.95ppm18, assignment was performed with 1H-31P 2D NMR (supplementary materials). Values in the column represent the average over 3 different sample extractions over a period of one year.
dMolar lipid content in the extract as determined from simulated spectra using the DMFIT software (see Materials and Methods and Supplementary Fig. 1). Figures represent the average over 3 NMR sample preparations. Bold stand for the most abundant species.
eOnly detected once among 3 samples. Assignment by comparison with literature values.
fOnly detected once among 3 samples.
gAssignment by comparison with literature values.