AMP	adenosine monophosphate
AREG	amphiregulin
Asm	acid sphingomyelinase
ATP	adenosine triphosphate
BDNF	brain-derived neurotrophic factor
CC	collaborative cross
CCL, CXCL	chemokine ligand
CCN3	cellular network communication factor 3
CCR, CXCR	chemokine receptor
CD	cluster of differentiation
CLN	cervical lymph node
CNS	central nervous system
CSF	cerebrospinal fluid
CTLA-4	cytotoxic T-lymphocyte-associated Protein 4
DC	dendritic cell
DEREG	depletion of regulatory T cells
DTR	diphtheria toxin receptor
EAE	experimental autoimmune encephalomyelitis
EBV	Epstein Barr virus
Foxp3	forkhead box protein P3
GDNF	glial cell line-derived neurotrophic factor
GFP	green fluorescent protein
GITR	glucocorticoid-induced TNFR-related protein
HAND	HIV-1 associated neurocognitive disorder
HIV	human immunodeficiency virus
HSV	herpes simplex virus
ICOS	inducible T cell costimulator
IDO-1	indoleamine 2,3-dioxygenase 1
IFN	interferon
IgM	immunglobulin M
IL	interleukin
IL-2C	IL-2-anti-IL-2-antibody complexes
iNOS	inducible nitric oxide synthase
IPEX	immune dysregulation, polyendocrinopathy, enteropathy, X-linked syndrome
iTreg	induced regulatory T cell
JEV	Japanese encephalitis virus
KLRG1	killer cell lectin-like receptor subfamily G member 1
LAG3	lymphocyte activation gene 3
MCMV	murine cytomegalovirus encephalitis
MHC	major histocompatibility complex
MHV	mouse hepatitis virus
MS	multiple sclerosis
MV	measles virus
NMDA	N-methyl-D-aspartate
NPC	neural precursor cells
nTreg	natural regulatory T cell
PD-L1	programmed death-ligand 1
RAG	recombination-activating gene
SSPE	subacute sclerotizing panencephalitis
STAT	signal transducer and activator of transcription
Tconv	conventional T cell
TCR	T cell receptor
TGF	transforming growth factor
TLR	toll-like receptor
TMEV	Theiler’s murine encephalomyelitis virus
TMEV-IDD	Theiler’s murine encephalomyelitis virus-induced demyelinating disease
TNF	tumor necrosis factor
TNFR	tumor necrosis factor receptor
Tr1	type 1 regulatory T cell
Treg	regulatory T cell
VZV	Varizella-zoster virus
WNV	West Nile virus