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. 2020 Mar 5;21(5):1800. doi: 10.3390/ijms21051800

Table 2.

Target genes regulated by both long noncoding RNA (lncRNA) and DNA methylation.

lncRNA Regulation Gene Log2FC DMR Methylation Difference
LNC_008609,
LNC_008671		 trans LIMD2 −0.83 gene body −0.39
LNC_012679 trans BLMH 1 0.67 gene body 0.35
LNC_008303 trans ASPA 1.41 promoter −0.16
LNC_012355 trans, cis ABCD3 2 1.05 gene body −0.49
LNC_010111 trans, cis CCDC18 −0.74 gene body 0.35
LNC_006756 trans HAO1 2 0.99 gene body 0.33
LNC_010111, LNC_010862 trans FLVCR2 −1.16 gene body −0.4
LNC_010073, LNC_010240 trans FAM13A 0.89 gene body −0.18
LNC_002556 trans, cis ENSGALG00000010639 −0.73 gene body 0.52
LNC_009039 trans, cis ENSGALG00000011528 −0.91 gene body 0.6
LNC_000820 trans SLC39A8 0.73 gene body −0.2
LNC_010111 trans MYO16 1.44 gene body −0.32
LNC_000333 trans COTL1 −0.84 gene body −0.36
LNC_007320, LNC_007320 trans CELF2 −0.72 gene body −0.24, −0.31
LNC_005357, LNC_007350, LNC_010111, LNC_010862 trans RAC2 1 −0.78 gene body −0.17
LNC_001439, LNC_001531, LNC_007015, LNC_010098 trans JAM2 0.59 gene body 0.38
LNC_001714, LNC_001742, LNC_006829, LNC_012722 trans WDPCP 1.92 gene body −0.24
LNC_001439, LNC_001531, LNC_005357, LNC_007015, LNC_010098, LNC_010111 trans ENSGALG00000033919 0.84 gene body 0.11
LNC_001272, LNC_002705, LNC_003079, LNC_007151, LNC_010862, LNC_011070 trans DOCK2 1 −0.62 gene body 0.19
LNC_002705, LNC_003079, LNC_008608, LNC_012083, LNC_012722 trans DIP2C 0.92 gene body −0.22
LNC_001272, LNC_002705, LNC_003079, LNC_007151, LNC_008608, LNC_010862, LNC_011070 trans GALNT17 −1.32 gene body −0.18
ENSGALT00000085791, LNC_001272, LNC_007151, LNC_007350, LNC_010862, LNC_011070 trans MARCH1 1 −0.78 gene body −0.27, −0.33
LNC_001272, LNC_001439, LNC_002556, LNC_005357, LNC_007151, LNC_007350, LNC_008609, LNC_010111, LNC_010494 trans MEGF11 3.15 gene body −0.17

1 Immune-related genes; 2 Lipid- and glucose-related genes.