Table A2.
Number of mapped reads for each mapper and sample.
| Sample | bwa | CLC | HISAT2 | kallisto | RSEM | salmon | STAR |
|---|---|---|---|---|---|---|---|
| A | 24,990,288 | 25,070,332 | 25,727,064 | 25,202,788 | 25,068,400 | 25,488,500 | 25,877,150 |
| B | 22,235,860 | 22,831,185 | 22,831,427 | 22,489,984 | 22,450,834 | 22,625,100 | 23,535,895 |
| C | 23,568,631 | 23,650,969 | 24,398,527 | 23,911,331 | 23,729,822 | 24,096,400 | 24,545,823 |
| D | 22,665,145 | 23,292,374 | 23,392,011 | 23,182,011 | 23,001,552 | 23,294,400 | 24,114,936 |
| E | 31,067,889 | 31,136,183 | 31,948,360 | 31,315,586 | 31,186,635 | 31,651,600 | 32,144,692 |
| F | 22,079,186 | 23,828,249 | 22,529,274 | 23,226,055 | 22,975,469 | 23,289,400 | 24,362,368 |
| G | 24,360,053 | 24,368,639 | 25,003,451 | 24,630,743 | 24,435,931 | 24,818,000 | 25,152,392 |
| H | 22,607,768 | 23,256,060 | 23,230,510 | 22,983,234 | 22,847,497 | 23,135,800 | 23,972,434 |
| I | 20,887,128 | 20,897,575 | 21,647,744 | 21,094,905 | 21,052,741 | 21,301,500 | 21,759,724 |
| J | 25,002,889 | 25,748,821 | 25,729,980 | 25,530,361 | 25,258,258 | 25,626,800 | 26,525,228 |
| K | 28,251,892 | 28,394,902 | 29,083,561 | 28,728,018 | 28,398,031 | 28,924,400 | 29,340,134 |
| L | 27,691,133 | 28,565,611 | 28,456,640 | 28,333,833 | 27,965,330 | 28,411,700 | 29,380,081 |
| M | 24,027,754 | 24,158,404 | 24,771,967 | 24,370,150 | 24,159,388 | 24,539,200 | 24,947,419 |
| N | 25,448,518 | 26,128,347 | 26,116,046 | 25,859,912 | 25,708,968 | 25,908,500 | 26,872,750 |
| O | 30,483,322 | 30,538,741 | 31,426,082 | 30,970,549 | 30,650,488 | 31,145,900 | 31,631,436 |
| P | 23,748,275 | 24,471,940 | 24,562,932 | 24,318,422 | 24,070,551 | 24,406,800 | 25,332,412 |
| Q | 26,863,089 | 26,968,681 | 27,679,891 | 27,157,401 | 26,977,076 | 27,405,000 | 27,843,106 |
| R | 19,700,000 | 20,245,101 | 20,218,359 | 19,970,836 | 19,918,383 | 20,052,800 | 20,826,196 |
| S | 22,171,458 | 22,274,280 | 22,902,423 | 22,444,868 | 22,280,936 | 22,624,300 | 23,035,647 |
| T | 23,165,182 | 23,815,751 | 23,748,284 | 23,543,789 | 23,398,523 | 23,638,100 | 24,456,937 |
| U | 24,145,575 | 24,192,319 | 24,905,595 | 24,499,411 | 24,279,099 | 24,667,800 | 25,057,610 |
| V | 29,305,198 | 30,181,899 | 30,105,423 | 29,951,050 | 29,635,355 | 30,012,700 | 31,037,834 |
| W | 30,171,991 | 30,240,229 | 31,135,272 | 30,619,320 | 30,314,724 | 30,820,900 | 31,321,391 |
| X | 26,417,781 | 27,215,579 | 27,146,639 | 26,999,068 | 26,701,971 | 27,089,600 | 28,004,846 |
| Y | 23,467,493 | 23,523,457 | 24,062,637 | 23,713,957 | 23,548,791 | 23,915,800 | 24,211,437 |
| Z | 22,939,890 | 23,531,637 | 23,488,307 | 23,241,258 | 23,186,262 | 23,333,700 | 24,169,828 |
| AA | 20,347,062 | 20,333,841 | 20,891,798 | 20,594,460 | 20,425,031 | 20,742,500 | 21,011,777 |
| AB | 26,183,324 | 26,842,810 | 26,903,033 | 26,663,997 | 26,539,902 | 26,769,800 | 27,709,817 |
| AC | 26,065,885 | 26,102,795 | 26,890,847 | 26,358,644 | 26,235,209 | 26,562,400 | 27,054,414 |
| AD | 24,904,560 | 25,532,006 | 25,483,657 | 25,267,366 | 25,201,022 | 25,348,100 | 26,234,545 |
| AE | 19,055,414 | 19,320,692 | 19,842,597 | 19,566,392 | 19,295,597 | 19,670,300 | 19,967,391 |
| AF | 17,469,949 | 18,053,590 | 18,090,815 | 17,854,059 | 17,755,997 | 17,898,700 | 18,672,118 |
| AG | 24,163,365 | 24,161,812 | 24,876,952 | 24,468,971 | 24,283,108 | 24,682,500 | 25,047,179 |
| AH | 20,953,174 | 21,498,746 | 21,436,520 | 21,310,760 | 21,215,866 | 21,379,400 | 22,109,670 |
| AI | 23,823,058 | 23,916,429 | 24,617,944 | 24,223,766 | 23,973,245 | 24,383,700 | 24,792,766 |
| AJ | 25,023,005 | 25,804,958 | 25,767,495 | 25,481,098 | 25,325,866 | 25,563,800 | 26,594,060 |
| Col-0 % | 95.9 | 96.2 | 98.9 | 97.2 | 96.4 | 97.9 | 99.5 |
| N14 % | 92.4 | 95.2 | 94.9 | 94.2 | 93.6 | 94.6 | 98.1 |
| Total % | 94.1 | 95.7 | 96.9 | 95.7 | 95.0 | 96.3 | 98.8 |