Table 3.
TCGA overall survival (OS) tasks
| TCGA OS tasks | |||||
|---|---|---|---|---|---|
| Project | Disease | Label | Label type | Group | Samples |
| CESC | cervical squamous cell carcinoma | OS | survival | train | 304 |
| COAD | colon adenocarcinoma | OS | survival | train | 455 |
| ESCA | esophageal carcinoma | OS | survival | train | 184 |
| KIRP | kidney papillary cell carcinoma | OS | survival | train | 289 |
| LUAD | lung adenocarcinoma | OS | survival | train | 507 |
| OV | ovarian cancer | OS | survival | train | 420 |
| PAAD | pancreatic adenocarcinoma | OS | survival | train | 178 |
| SARC | sarcoma | OS | survival | train | 259 |
| STAD | stomach adenocarcinoma | OS | survival | train | 409 |
| UCEC | uterine corpus endometrial carcinoma | OS | survival | train | 540 |
| HNSC | head-neck squamous cell carcinoma | OS | survival | validate | 501 |
| BLCA | bladder urothelial carcinoma | OS | survival | test | 407 |
| LUSC | lung squamous cell carcinoma | OS | survival | test | 495 |
The 13 overall survival tasks derived from TCGA used to train supervised models and validate the unsupervised embeddings. The project names correspond to those in Fig. 2