Table 1. Datasets of the NFI family in breast cancer (ONCOMINE database).
| Gene | Dataset | Normal (cases) | Tssumor (cases) | Fold change | t-Test | p-Value |
|---|---|---|---|---|---|---|
| NFIA | Karnoub | Breast (15) | Invasive ductal breast carcinoma (7) | −3.381 | −7.532 | 1.09E−06 |
| Richardson 2 | Breast (7) | Ductal breast carcinoma (40) | −6.061 | −7.225 | 2.40E−09 | |
| Curtis | Breast (144) | Ductal breast carcinoma in situ (10) | −2.207 | −9.411 | 8.54E−07 | |
| Invasive ductal breast carcinoma (1,556) | −2.017 | −26.559 | 4.91E−69 | |||
| Invasive breast carcinoma (21) | −2.292 | −8.448 | 9.48E−09 | |||
| Medullary breast carcinoma (32) | −3.457 | −14.097 | 4.20E−17 | |||
| Tubular breast carcinoma (67) | −2.039 | −15.725 | 3.61E−31 | |||
| Mucinous breast carcinoma (46) | −2.227 | −14.215 | 4.25E−22 | |||
| Breast carcinoma (14) | −2.137 | −6.042 | 1.51E−05 | |||
| TCGA | Breast (61) | Invasive ductal breast carcinoma (389) | −2.277 | −11.49 | 7.00E−22 | |
| Mucinous breast carcinoma (4) | −2.851 | −10.414 | 1.96E−05 | |||
| Gluck | Breast (4) | Invasive breast carcinoma (154) | −2.207 | −6.408 | 4.27E−04 | |
| Finak | Breast (6) | Invasive breast carcinoma (53) | 5.152 | 13.608 | 6.52E−18 | |
| NFIB | TCGA | Breast (61) | Invasive ductal breast carcinoma (389) | −6.159 | −27.478 | 6.59E−80 |
| Invasive breast carcinoma (76) | −4.54 | −13.706 | 5.59E−25 | |||
| Invasive lobular breast carcinoma (36) | −4.361 | −9.378 | 2.28E−12 | |||
| Curtis | Breast (144) | Invasive ductal breast carcinoma (1,556) | −3.689 | −37.562 | 7.71E−116 | |
| Invasive lobular breast carcinoma (148) | −2.675 | −16.623 | 1.54E−41 | |||
| Invasive ductal and invasive lobular breast carcinoma (90) | −3.334 | −14.802 | 1.13E−28 | |||
| Ductal breast carcinoma in situ (10) | −2.275 | −4.665 | 5.10E−04 | |||
| Mucinous breast carcinoma (46) | −5.352 | −13.363 | 1.95E−18 | |||
| Tubular breast carcinoma (67) | −3.096 | −13.05 | 4.36E−22 | |||
| Breast phyllodes tumor (5) | −2.34 | −3.955 | 0.008 | |||
| Ma 4 | Breast (14) | Invasive ductal breast carcinoma stroma (9) | −3.974 | −5.874 | 5.06E−06 | |
| Ductal breast carcinoma in situ epithelial (9) | −4.958 | −8.387 | 9.82E−08 | |||
| Invasive ductal breast carcinoma epithelia (9) | −2.272 | −7.553 | 4.99E−07 | |||
| Ductal breast carcinoma in situ stroma (9) | −2.008 | −4.236 | 1.60E−04 | |||
| Zhao | Breast (3) | Invasive ductal breast carcinoma (37) | −4.418 | −8.645 | 1.20E−08 | |
| Lobular breast carcinoma (21) | −3.452 | −7.496 | 7.44E−07 | |||
| Turashvili | Ductal breast cell (10) | Invasive lobular breast carcinoma (5) | −8.342 | −8.342 | 0.002 | |
| Bular breast cell (10) | ||||||
| Sorlie | Breast (4) | Ductal breast carcinoma (63) | −2.554 | −5.64 | 2.42E−04 | |
| Richardson | Breast (7) | Ductal breast carcinoma (40) | −4.237 | −7.552 | 9.00E−10 | |
| Sorlie 2 | Breast (4) | Ductal breast carcinoma (86) | −2.501 | −5.143 | 0.002 | |
| Perou | Breast (3) | Ductal breast carcinoma (35) | −2.535 | −4.175 | 0.005 | |
| Gluck | Breast (4) | Invasive breast carcinoma (154) | −2.041 | −7.529 | 2.46E−05 | |
| Finak | Breast (6) | Invasive breast carcinoma (53) | 8.451 | 13.331 | 1.59E−13 | |
| NFIC | Richardson | Breast (7) | Ductal breast carcinoma (40) | −2.196 | −5.431 | 6.11E−06 |
| Sorlie 2 | Breast (4) | Lobular breast carcinoma (6) | −2.029 | −3.852 | 0.003 | |
| NFIX | Curtis | Breast (144) | Invasive ductal breast carcinoma (1,556) | −2.138 | −27.969 | 2.43E−104 |
| Invasive ductal and invasive lobular breast carcinoma (90) | −2.121 | −12.042 | 5.06E−22 | |||
| Sorlie | Breast (4) | Ductal breast carcinoma (63) | −2.417 | −6.071 | 5.29E−05 | |
| Perou | Breast (3) | Ductal breast carcinoma (36) | −2.292 | −5.401 | 6.13E−04 | |
| Sorlie 2 | Breast (4) | Ductal breast carcinoma (92) | −2.319 | −5.898 | 4.21E−04 | |
| Zhao | Breast (3) | Invasive ductal breast carcinoma (34) | −2.214 | −6.293 | 2.85E−06 | |
| Karnoub | Breast (15) | Invasive ductal breast carcinoma stroma (7) | −2.012 | −3.55 | 0.001 | |
| Gluck | Breast (4) | Invasive breast carcinoma (154) | −2.573 | −7 | 5.94E−04 |
Note:
NFI, Nuclear factor I; TCGA, The Cancer Genome Atlas.