Table 1.
Isolates of JEV used in the study
| Isolate name | Place of isolation | Year of isolation | Source | GenBank accession no. | Genotype |
|---|---|---|---|---|---|
| GD1† | China, Guangdong | 2009 | Bat | JN711458.1 | III |
| HN2† | China, Hainan | 2008 | Bat | JN711459.1 | III |
| SY87† | China Hunan | 2007 | Bat | JX050152.1* | III |
| YY158† | China Hunan | 2008 | Bat | JX093498.1 * | III |
| B58 | China, Yunnan | 1986 | Bat | FJ185036.1 | III |
| GB30 | China, Yunnan | 1997 | Bat | FJ185037.1 | III |
| HB49 | China, Yunnan | 1990 | Bat | JF706284.1 | III |
| HB97 | China, Yunnan | 1990 | Bat | JF706285.1 | III |
| Beijing-1 | China | 1949 | Human brain | L48961.1 | III |
| ChiangMai | Thailand | 1964 | Human | U70393.1* | III |
| Fj02-76 | China Fujian | 2002 | Human | JN381867.1 | III |
| FJ03-39 | China Fujian | 2003 | Human | JN381859.1 | III |
| Liyujie | China, Yunnan | 1979 | Human | FJ185039.1* | III |
| ML17-live | Taiwan | 1981 | Human | AY508812.1 | III |
| Nakayama | Japan | 1935 | Human brain | EF571853.1 | III |
| P3 | China | 1949 | Human brain | U47032.1 | III |
| P19-Br | Thailand | 1982 | Human | U70416.1* | I |
| Vellore | India | 1958 | Human brain | AF080251.1 | III |
| GP78 | India | 1978 | Human brain | AF075723.1 | III |
| 057434 | India | 2005 | Human | EF623988.1 | III |
| BN19 | China, Yunnan | 1982 | Mosquito | FJ185038.1* | III |
| DL04-45 | China Yunnan | 2004 | Mosquito | JN381854.1 | III |
| JaGAr01 | Japan | 1959 | Mosquito | AF069076.1 | III |
| JKT5441 | Indonesia | 1981 | Mosquito | U70406.1* | II |
| JKT7003 | Indonesia | 1981 | Mosquito | U70408.1* | IV |
| K94P05 | Korea | 1994 | Mosquito | AF045551.1 | I |
| K87P39 | South Korea | 1987 | Mosquito | AY585242.1 | III |
| M859 | Cambodia | 1967 | Mosquito | U70410.1* | I |
| SA14 | China | 1954 | Mosquito | U14163.1 | III |
| SH04-3 | China | 2004 | Mosquito | DQ404105.1* | III |
| VN118 | Vietnam | 1979 | Mosquito | U70420.1* | III |
| WTP-70-22 | Malaysia | 1970 | Mosquito | U70421.1* | II |
| YNJH04-18 | China | 2004 | Mosquito | DQ404146.1* | III |
| XZ0934 | China Tibet | 2009 | Mosquito | JF915894.1 | V |
| SA14-2-8 | China | NA | Vaccine | U15763.1 | III |
| SA14-14-2 | China | 1954 | Vaccine | AF315119.1 | III |
| B-2239 | Thailand | 1984 | Pig | U70391.1* | I |
| JEV/sw/Mie/40/2004 | Japan | 2004 | Swine | AB241118.1 | I |
| WHE | China | NA | Pig | EF107523.1 | III |
| YN83-Meng83-54 | China Yunnan | 1983 | Lasiohelea taiwana (Shiraki) | JF706282.1 | I |
| HLJ02-134 | China Heilongjiang | 2002 | Genus Culicoides | JF706276.1 | III |
NA, Not available in GenBank
† Isolates sequenced in this study
* Isolates for which E gene sequence information is available