Table 1.
Gene | NC99a | Tokachi09 | Obihiro12-1 and Obihiro12-2 | ||||||
---|---|---|---|---|---|---|---|---|---|
Genome position | No. of nucleotides | No. of amino acids | Genome position | No. of nucleotides | No. of amino acids | Genome position | No. of nucleotides | No. of amino acids | |
5’ UTR | 1–209 | 209 | 1-208 | 208 | 1-208 | 208 | |||
ORF1a | 210–13,499 | 13,290 | 4429 | 209-13,474 | 13,266 | 4,421 | 209-13,465 | 13,257 | 4,418 |
ORF1ab | 210–21,595 | 21,386 | 7128 | 209-21,570 | 21,362 | 7,120 | 209-21,561 | 21,353 | 7,117 |
NS2 | 21,610–22,446 | 837 | 278 | 21,585-22,421 | 837 | 278 | 21,576-22,160 | 585 | 194 |
HE | 22,458–23,729 | 1,272 | 423 | 22,433-23,704 | 1,272 | 423 | 22,422-23,693 | 1,272 | 423 |
S | 23,744–27,835 | 4,092 | 1363 | 23,719-27,810 | 4,092 | 1,363 | 23,708-27,799 | 4,092 | 1,363 |
p4.7 | 27,825–27,947 | 123 | 40 | 27,800-27,841 | 42 | 13 | 27,789-27,812 | 24 | 7 |
p12.7 | 28,076–28,405 | 330 | 109 | 27,866-28,195 | 330 | 109 | 28,000-28,329 | 330 | 109 |
E | 28,392–28,646 | 255 | 84 | 28,182-28,436 | 255 | 84 | 28,316-28,570 | 255 | 84 |
M | 28,661–29,353 | 693 | 230 | 28,451-29,143 | 693 | 230 | 28,585-29,277 | 693 | 230 |
N | 29,363–30,703 | 1,341 | 446 | 29,153-30,493 | 1,341 | 446 | 29,287-30,627 | 1,341 | 446 |
I | 29,424–30,044 | 621 | 206 | 29,214-29,834 | 621 | 206 | 29,348-29,968 | 621 | 206 |
3’ UTR | 30,704–30,992 | 289 | 30,494-30,782 | 289 | 30,628-30,916 | 289 |
aSequence data of NC99 are from Zhang et al [5]