Table 1.

Sequencing results by sample

Sample	Reads	Contigs	Viral contigs	Bacteriophage contigs	Parvovirus contigs	Adenovirus contigs	Papillomavirus contigs
ALAS	152,788	2,839	406	405	-	-	1
ALOS	277,710	3,042	387	384	2	1	-
SLAS	539,804	1,998	163	162	-	1	-
SLOS	375,482	4,205	347	347	-	-	-
TOTAL	1,345,784	12,084	1,303	1,298	2	2	1

ALAS, A. lituratus anal swab; ALOS, A. lituratus oropharyngeal swab; SLAS, S. lilium anal swab; SLOS, S. lilium oropharyngeal swab