Table 3.
Schematic diagram showing annealed sense and antisense oligonucleotides along with restriction enzyme sites used for cloning into the shRNA expression vector. The siRNA sequences are underlined
Name | BamHI | Anti-sense strand | Loop | Sense strand | RNA PolIII terminator | XhoI |
---|---|---|---|---|---|---|
shRNA-G1 |
5′-GATCCCAAACTTACTGACTTGGTGGTC TTGATATCCGGACCACCAAGTCAGTAAGTTTTTTTTTCCAA C-3′ 3′-GGTTTGAATGACTGAACCACCAGAACTATAGGCCTGGTGGTTCAGTCATTCAAAAAAAAAGGTTGAGCT-5′ |
|||||
shRNA-G2 |
5′-GATCCCTATTCCTGAGCACTTTCCG TTGATATCCGCGGAAAGTGCTCAGGAATATTTTTTCCAAC-3′ 3′-GGATAAGGACTCGTGAAAGGCAACTATAGGCGCCTTTCACGAGTCCTTATAAAAAAGGTTGAGCT-5′ |
|||||
shRNA-G3 |
5′-GATCCCGCTCCTTTTAGAGACTTATAC TTGATATCCGGTATAAGTCTCTAAAAGGAGCTTTTTTCCAAC-3′ 3′-GGCGAGGAAAATCTCTGAATATGAACTATAGGCCATATTCAGAGATTTTCCTCGAAAAAAGGTTGAGCT-5′ |
|||||
shRNA-G4 |
5′-GATCCCACTTTCAAACACCCTTTTGAG TTGATATCCGCTCAAAAGGGTGTTTGAAAGT TTTTTTCCAAC-3′ 3′-GGTGAAAGTTTGTGGGAAAACTCAACTATAGGCGAGTTTTCCCACAAACTTTCAAAAAAAGGTTGAGCT-5′ |
|||||
shRNA-G5 |
5′-GATCCCGCTTATATGATTCCCATGAAGG TTGATATCCGCCTTCATGGGAATCATATAAGTTTTTTCCAAC-3′ 3′-GGCGAATATACTAAGGGTACTTCCAACTATAGGCGGAAGTACCCTTAGTATATTCAAAAAAGGTTGAGCT-5′ |
|||||
shRNA-G6 |
5′-GATCCCGTTAGAGACTTATACAGGCCTC TTGATATCCGGAGGCCTGTATAAGTCTCTAA TTTTTTCCAAC-3′ 3′-GGCAATCTCTGAATATGTCCGGAGAACTATAGGCCTCCGGACATATTCAGAGATTAAAAAAGGTTGAGCT-5′ |
|||||
shRNA-G7 |
5′-GATCCCACGTCTGAAACTTACTGACTT TTGATATCCGAAGTCAGTAAGTTTCAGACGTTTTTTTCCAAC-3′ 3′-GGTGCAGACTTTGAATGACTGAAAACTATAGGCTTCAGTCATTCAAAGTCTGCAAAAAAAGGTTGAGCT-5′ |
|||||
shRNA-G8 |
5′-GATCCCGTAAACCATTGAAAAACACC TTGATATCCGGGTGTTTTTCAATGGTTTATTTTTTCCAAC-3′ 3′-GGCATTTGGTAACTTTTTGTGGAACTATAGGCCCACAAAAAGTTACCAAATAAAAAAGGTTGAGCT-5′ |
|||||
shRNA-G9 |
5′-GATCCCATTTGGACAGCTGAGATGG TTGATATCCGCCATCTCAGCTGTCCAAATTTTTTTCCAAC-3′ 3′-GGTAAACCTGTCGACTCTACCAACTATAGGCGGTAGAGTCGACAGGTTTAAAAAAAGGTTGAGCT-5′ |
|||||
shRNA-N |
5′-GATCCCGTAAAGATGCATGTTCAGAGAC TTGATATCCGGTCTCTGAACATGCATCTTTATTTTTTCCAAC-3′ 3′-GGCATTTCTACGTACAAGTCTCTGAACTATAGGCCAGAGACTTGTACGTAGAAATAAAAAAGGTTGAGCT-5′ |
|||||
shRNA-C |
5′-GATCCCCGTTAAACTGACTCAAGCGCC TTGATATCCGGGCGCTTGAGTCAGTTTAACGTTTTTTCCAAC-3′ 3′-GGGCAATTTGACTGAGTTCGCGGAACTATAGGCCCGCGAACTCAGTCAAATTGCAAAAAAGGTTGAACT-5′ |