Table 1.
Differences in genome organization between the SHQP/YM/2013 strain and the CV777 strain
| Gene | SHQP/YM/2013 strain | CV777 strain | ||||||
|---|---|---|---|---|---|---|---|---|
| Start | Stop | Size (nt) | Size (aa) | Start | Stop | Size (nt) | Size (aa) | |
| 5′UTR | 1 | 292 | 292 | – | 1 | 296 | 296 | – |
| ORF1a | 293 | 12601 | 12309 | 4103 | 297 | 12605 | 12309 | 4103 |
| ORF1b | 12601 | 20637 | 8037 | 2678 | 12605 | 20641 | 8037 | 2678 |
| S | 20634 | 24794 | 4161 | 1386 | 20638 | 24789 | 4152 | 1383 |
| ORF3 | 24794 | 25468 | 675 | 224 | 24789 | 25463 | 675 | 224 |
| E | 25449 | 25679 | 231 | 76 | 25444 | 25674 | 231 | 76 |
| M | 25687 | 26367 | 681 | 226 | 25682 | 26362 | 681 | 226 |
| N | 26379 | 27704 | 1326 | 441 | 26374 | 27699 | 1326 | 441 |
| 3′UTR | 27705 | 28038 | 334 | – | 27700 | 28033 | 334 | – |