Table 2.
Gene lengths in four Thai PDCoV isolates and positions of amino acid deletions/insertions and substitutions in Thai PDCoV isolates compared to the other two PDCoV groups
Thai isolates | Gene | ||||||
---|---|---|---|---|---|---|---|
ORF1a/1b | S | E | M | N | |||
ST1_0213 | Length | Nucleotides | 18,786 | 3,477 | 249 | 651 | 1,026 |
Amino acids | 6,262 | 1,159 | 83 | 217 | 342 | ||
China group | Deletions* | 401LK402 and 758PVG760 | 571V | - | - | - | |
Insertions* | - | 51N | - | - | - | ||
Number of substitutions | 91 | 35δ | - | 1 | 5 | ||
US group | Deletions* | 401LK402 and 758PVG760 | 571V | - | - | - | |
Insertions* | - | - | - | - | - | ||
Number of substitutions | 96 | 33δ | - | 1 | 5 | ||
ST2_0214 | Length | Nucleotides | 18,786 | 3,477 | 249 | 651 | 1,026 |
Amino acids | 6,262 | 1,159 | 83 | 217 | 342 | ||
China group | Deletions* | 401LK402 and 758PVG760 | 571V | - | - | - | |
Insertions* | - | 51N | - | - | - | ||
Number of substitutions | 91 | 37δ | - | 1 | 5 | ||
US group | Deletions* | 401LK402 and 758PVG760 | 571V | - | - | - | |
Insertions* | - | - | - | - | - | ||
Number of substitutions | 96 | 35δ | - | 1 | 5 | ||
TT_1215 | Length | Nucleotides | 18,786 | 3,477 | 249 | 651 | 1,026 |
Amino acids | 6,262 | 1,159 | 83 | 217 | 342 | ||
China group | Deletions* | 401LK402 and 758PVG760 | - | - | - | - | |
Insertions* | - | - | - | - | - | ||
Number of substitutions | 90 | 23δ | - | 1 | 4 | ||
US group | Deletions* | 401LK402 and 758PVG760 | - | - | - | - | |
Insertions* | - | - | - | - | - | ||
Number of substitutions | 95 | 23δ | - | 1 | 4 | ||
NT1_1215 | Length | Nucleotides | 18,786 | 3,479 | 249 | 651 | 1,026 |
Amino acids | 6,262 | 1,160 | 83 | 217 | 342 | ||
China group | Deletions* | 401LK402 and 758PVG760 | - | - | - | - | |
Insertions* | - | 51N | - | - | - | ||
Number of substitutions | 139 | 27δ | - | 1 | 3 | ||
US group | Deletions* | 401LK402 and 758PVG760 | - | - | - | - | |
Insertions* | - | - | - | - | - | ||
Number of substitutions | 144 | 27δ | - | 1 | 3 |
* The numbers indicate the position in each gene
δAmino acid substitutions at different positions