Table 1.
Sequence similarities in the six major ORFs of DKNV, CavV, and NDiV
| ORF | Predicted protein | Amino acid number (frame) | Predicted molecular mass (kDa) | Similarity | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| DKNV | CavV | NDiV | DKNV | CavV | NDiV | DKNV-CavV | DKNV-NDiV | CavV-NDiV | ||
| 1a | Polyprotein 1a | 2537 (0) | 2499 (0) | 2503 (0) | 292.5 | 288.0 | 288.4 | 81.6 | 82.4 | 94.8 |
| 1b | Polyprotein 1b | 2587 (−1) | 2589 (−1) | 2589 (−1) | 299.6 | 300.3 | 300.0 | 93.2 | 93.2 | 98.1 |
| 2a | Spike protein | 908 (+1) | 900 (−1) | 899 (−1) | 103.8 | 103.0 | 102.7 | 87.6 | 90.0 | 91.5 |
| 2b | Nucleocapsid protein | 222 (0) | 214 (+1) | 212 (+1) | 24.7 | 24.0 | 23.7 | 81.2 | 80.3 | 93.5 |
| 3a | Glycoprotein | 157 (−1) | 158 (+1) | 158 (−1) | 17.4 | 17.6 | 17.5 | 93.7 | 95.6 | 97.5 |
| 3b | Matrix protein | 116 (0) | 116 (−1) | 116 (0) | 13.9 | 14.0 | 13.9 | 85.3 | 88.0 | 94.0 |