Table 2.

Putative recombination events amongst the five canine CV genomes sequenced, detected by the RDP, GeneConv, BootScan, MaxChi, Chimaera, SiScan and 3SEQ algorithms

Event number	Strain	Major parent	Minor parent	Position(in alignment)	P-value
					RDP	GENECONV	BootScan	MaxChi	Chimaera	SiScan	3SEQ
1	C79	102	FUBerlin-JRS	1205–1690	4.470×10−5	2.197×10−4	1.858×10−4	3.377×10−5	3.748×10−5	4.850×10−6	1.337×10−6
2	C24	102	FUBerlin-JRS	1205–1690	4.470×10−5	2.197×10−4	1.858×10−4	3.377×10−5	3.748×10−5	4.850×10−6	1.337×10−6
3	C24	GL33	C79	60–1828	7.662×10−4	9.737×10−3	1.909×10−3	2.200×10−8	-	8.831×10−27	4.794×10−24
4	K1	102	FUBerlin-JRS	1206–1598	4.470×10−5	2.197×10−4	1.858×10−4	3.377×10−5	3.748×10−5	4.850×10−6	1.337×10−6
5	C85	102	FUBerlin-JRS	1205–1690	4.470×10−5	2.197×10−4	1.858×10−4	3.377×10−5	3.748×10−5	4.850×10−6	1.337×10−6
6	C85	GL33	C79	100–1750	7.662×10−4	9.737×10−3	1.909×10−3	2.200×10−8	–	8.831×10−27	4.794×10−24
7	XF16	CB6293/1-14	YL11	974–1860	7.885×10−14	2.183×10−11	3.158×10−12	8.700×10−14	2.571×10−9	1.365×10−23	1.199×10−35
8	XF16	UCD1-1698	WM46	114–659	–	1.697×10−9	1.136×10−11	3.648×10−10	–	7.725×10−17	1.670×10−25