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. 2009 Aug 25;28(11):1305. doi: 10.1007/s10096-009-0780-y

Table 1.

Nucleotide sequences of the primers and probes used for multiplex Q-PCR and sequencing

Multiplex Q-PCR primers and probes Sequence
 
hBoV NP-1 gene (88 bp)a  
 Forward primer 5′-AGAGGCTCGGGCTCATATCA-3′ (2478)c
 Reverse primer 5′-TCTTCATCACTTGGTCTGAGGTCTT-3′ (2541)c
 Probe 5′-VIC-AGGAACACCCAATCARCCACCTATCGTCT-TAMRA-3′ (2500)c
AdV hexon gene (132 bp)b  
 Forward primer 5′-GCCACGGTGGGGTTTCTAAACTT-3′ (21)e
 Reverse primer 5′-GCCCCAGTGGTCTTACATGCACATC-3′ (152)e
 Probe 5′-FAM-TGCACCAGACCCGGGCTCAGGTACTCCGA-TAMRA-3′ (89)e
 
Sequencing primers Sequence
 
hBoV NP-1 gene (313 bp)a  
 Forward primer 5′-CTCCAGCAAGTCCTCCAAAC-3′ (2253)c
 Reverse primer idem hBoV Q-PCR
hBoV VP2 gene (965 bp) a  
 Forward primer 5′-CAGCTGGAGGCAATGCTAC-3′ (4059)d
 Reverse primer 5′-ATGACGTGGGCTGGATGTAT-3′ (5005)d
 Forward primer semi-nested 5′-AATTGCAAACCCATCACTCTCA-3′ (4558)d
 Reverse primer semi-nested 5′-CCCAGACTTGATTTGGAAACATC-3′ (4645)d

hBoV = human bocavirus; AdV = adenovirus

aDesigned as part of the present study

bHeim et al. [12], adapted according to the sequence information available in GenBank

c, d, eThe location of the primers and probes is indicated in parentheses (the reference sequence is DQ000495(c) and DQ000496(d) for hBoV and AB330083(e) for AdV)