Table 1.
Parameter | DNA | RNA | ||
---|---|---|---|---|
HV | DV | HV | DV | |
Reads in library | 222,787 | 258,137 | 16,630 | 17,078 |
Hits to host transcriptome | 10,156 | 2,091 | 8,571 | 8,955 |
Reads assembling to contigs | 193,501 | 221,940 | 12,544 | 12,943 |
Contigs > 100 bp | 19,885 | 13,308 | 133 | 117 |
Contigs > 500 bp | 13,442 | 7,849 | 17 | 6 |
Contigs > 5 kBp | 134 | 30 | 0 | 0 |
Average Length (bp) | 381 | 358 | 143 | 143 |
Average G + C % | 52.6 | 45.4 | 37.3 | 37.8 |
Non-host matches to nr protein database | 11,264 | 5,874 | 842 | 1,084 |
nr = Non-redundant protein database at NCBI. Contigs = contiguous sequences generated using CLC Genomics Workbench 4.0 (minimum overlap = 0.2 and percent ID = 95%)