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. 2011 Dec 29;31(2):487–491. doi: 10.1007/s00338-011-0864-x

Table 1.

Library characteristics of healthy viral (HV) and diseased viral (DV) DNA and RNA metagenomic libraries prepared from G. ventalina

Parameter DNA RNA
HV DV HV DV
Reads in library 222,787 258,137 16,630 17,078
Hits to host transcriptome 10,156 2,091 8,571 8,955
Reads assembling to contigs 193,501 221,940 12,544 12,943
Contigs > 100 bp 19,885 13,308 133 117
Contigs > 500 bp 13,442 7,849 17 6
Contigs > 5 kBp 134 30 0 0
Average Length (bp) 381 358 143 143
Average G + C % 52.6 45.4 37.3 37.8
Non-host matches to nr protein database 11,264 5,874 842 1,084

nr = Non-redundant protein database at NCBI. Contigs = contiguous sequences generated using CLC Genomics Workbench 4.0 (minimum overlap = 0.2 and percent ID = 95%)