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. 2011 May 4;18(2):501–514. doi: 10.1007/s00894-011-1092-6

Table 1.

Lowest and second lowest energy structures of the dimer and finally the monomeric structures. Data represent the interhelical distance, rotational angle of each of the individual TMDs and the averaged (overall TMDs) tilt angle, as well as the energy calculated with MOE

Method Distance (nm) Angle 1 (°) Angle 2 (°) Angle 3 (°) Tilt (°) Energy (kcal/mol)
Seq1 1.0 40 340 8 −503.6
(TMD3 + TMD2)
Seq1 1.20 260 220 −2 −878.1
((TMD3 + TMD2) + TMD1) 1.15 180 240 −10 −865.1
Seq2 0.95 340 300 0 −349.6
(TMD1 + TMD2)
Seq2 1.175 0 40 2 −863.5
((TMD1 + TMD2) + TMD3)
Sim 1.075 60 180 340 −4 −730.5
(TMD1 + TMD2 + TMD3) 1.075 40 100 80 4 −654.8