Table 2.
CHIKV proteins and their regions used in molecular modeling
| Sl. no. | CHIKV protein/domains modeled (target) | Template | PDB id | % identity with template | Region of target modeled (amino acids) |
|---|---|---|---|---|---|
| 1 | Helicase (nsP2) | Hydrolase ( Deinococcus radiodurans recd2) | 3E1s chain A | 26.3 | 1–102 |
| 2 | Peptidase C9 (nsP2) | Helicase nsp2. Chain: a. Venezuelan equine encephalitis virus | 2hwk chain A | 44.4 | 41–202 |
| 3 | Macrodomain (nsP3) | Non-structural protein 3. Chain: a Human coronavirus 229e | 3ewr chain A | 23 | 6–139 |
| 4 | S3Peptidase (Capsid) | Semliki forest virus capsid protein | 1Vcp chain C | 93.2 | 8–156 |
| 5 | E1 (Structural protein) | Glycoprotein e1 from Semliki forest virus. | 1rer chain A | 63.5 | 67–456 |