Table 1.
Primer name | Primer sequence | Product size (bp) | Reference | ||
---|---|---|---|---|---|
S1HS | (5′)-CTATACCCAATGGTAGGA-(3′) | 885 | Brandao et al. (2003) | ||
S1HA | (5′)-CTGAAACACGACCGCTAT-(3′) | ||||
S1N | (5′)-GTTTCTGTTAGCAGGTTTAA-(3′) | 488 | |||
S1NA | (5′)-ATATTACACCTATCCCCTTG-(3′) | ||||
Thermal cycling condition | |||||
Pre-denaturation | Denaturation | Primer annealing | Primer extension | Final extension | |
Outer primers | 94 °C; 180 s | 94 °C; 60 s | 53.4 °C; 90 s | 72 °C; 60 s | 72 °C; 600 s |
×35 cycles | |||||
Internal primers | 94 °C; 180 s | 94 °C; 60 s | 58.4 °C; 90 s | 72 °C; 60 s | 72 °C; 600 s |
×25 cycles |