Key resources table.
| Reagent type (species) or resource |
Designation | Source or reference |
Identifiers | Additional information |
|---|---|---|---|---|
| Strain, strain background (Adenovirus) | AAV1.hSyn.GCaMP6f.WPRE.SV40 | Penn Vector Core/addgene | Cat#: 100837-AAV1 | |
| Genetic reagent (M. musculus) | C57BL/6J | Jackson Laboratory | Stock No: 000664|Black 6 | |
| Genetic reagent (M. musculus) | Thy1-GCaMP6f transgenic line (GP5.3) | Janelia Research Campus; PMID:25250714 |
N/A | Male and female |
| Commercial assay | NeuroTrace | Thermo Fisher Scientific | Cat#: N21479 | |
| Software, algorithm | MATLAB | MathWorks | https://www.mathworks.com | |
| Software, algorithm | ImageJ | National Institutes of Health | https://imagej.nih.gov/ij/ | |
| Software, algorithm | ScanImage 5 | Vidrio Technologies | http://scanimage.vidriotechnologies.com/display/SI5/ScanImage+5 | |
| Software, algorithm | ViRMEn (Virtual Reality Mouse Engine) | PMID:25374363 | https://pni.princeton.edu/pni-software-tools/virmen | |
| Software, algorithm | Motion correction (CaImAn) | PMID:30652683 | https://github.com/flatironinstitute/CaImAn |