Table 4.

Polarity index matches by linear sequence in virus

No	Code	ID PUBMED	Sequence	#1	#2	References
1	AVP_0618	6096849	GPPISLERLDVGTNLGNAIAKLEAKELLESSDQI			[35]
2	AVP_0629	3788062	KVLHLEGEVNKIALLSTNKAVVSLSNGVSVLTS		N	[36]
3	AVP_0607	2893293	DFLEENITALLEEAQIQQEKNMYELQKLNSWDVFG			[37]
4	AVP_0168	8382405	EGPTLGNWAREIWATLFGKA		N	[38]
5	AVP_0179	8382405	NWAREIWATLFKKA		N	[38]
6	AVP_0467	10390360	FAIKWEYVLLLFLL			[39]
7	AVP_0512	1848704	SWLRDIWDWKCEVLSDFK			[40]
8	AVP_0514	1848704	SWLRDIWDWLCEVLSDFK			[40]
9	AVP_0373	1848704	SWLRDIWDWICEVLSDFK			[40]
10	AVP_0372	52472831	SWLRDIWDWICEVLSD			[41]
11	AVP_0387	9223423	TWLRAIWDWVCTALTDFK			[42]
12	AVP_0323	8822631	PPVYTKDVDISSQISSMNQSLQQSKDYIKEAQKILDTVNPSL			[43]
13	AVP_0328	3012869	VANDPIDISIELNKAKSDLEESKEWIRRSNQKLDSD		N	[44]
14	AVP_0210	11118300	ANTAFVSSAHNTQKIPAGAPFNRNLRAMLADLRQNAAFAG			[45]
15	AVP_0024	1695254	CGGNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQ			[46]
16	AVP_0312	16667080	EQCREEEDDR		N	[47]
17	AVP_0358	15893660	GGTIFDCGETCFLGTCYTPGCSCGNYGFCYGTN		N	[48]
18	AVP_0019	7841460	GICRCICGKGICRCICGR			[49]
19	AVP_0284	21685289	GICRCICGRGICRCICGR			[50]
20	AVP_0397	7529412	GIKEWKRIVQRIKDFLRNLV		N	[51]
21	AVP_0361	16872274	GLPVCGETCVGGTCNTPGCTCSWPVCTRN		N	[52]
22	AVP_0286	10521339	GVCRCLCRRGVCRCICRR			[53]
23	AVP_0304	15949629	KTCENLADTY			[54]
24	AVP_0684	7031661	LEAIPCSIPPCFLFGKPFVF			[55]
25	AVP_0692	7031661	LEAIPISIPPELAFAKPFVF			[55]
26	AVP_0703	7031661	LEAIPMSIPPEVFFGKPFVF			[55]
27	AVP_0155	9777331	LSYRCPCR		N	[56]
28	AVP_0409	1433527	WMEWDREIEELAKKAEELAKKAEELAKKAWASLWNWF			[57]
29	AVP_0222	3031048	YALLIRMIYKNI			[58]
30	AVP_0224	19468303	YQLLARMIYKNI			[59]
31	AVP_0225	9504927	YQLLIAMIYKNI			[60]
32	AVP_0584	2578615	YTSLIHSLIEESQNQQEKNEQELLEFDKWASLWNWF		N	[61]
33	AVP_0591	3040055	YTSLIHSLIEESQNQQEKNEQELLELNKWASLWNWF		N	[62]
34	AVP_0310	9516047	GLFGVLGSIAKHVLPHVVPVIAEKL		N	[63]
35	AVP_0183	7826699	DWHLGQGVSIEWRKK			[64]
36	AVP_0444	9784389	FLFPLITSFLSKVL			[65]
37	AVP_0452	10951191	GLFDIIKKIAESW			[66]
38	AVP_0459	12089438	GWLKKIESIIDAF			[67]
39	AVP_0460	11053427	HVDKKVADKVLLLKQLRIMRLLTRL		N	[68]
40	AVP_0348	7826699	TTWEAWDRAIAEYAARIEALIRAAQEQQEKNEAILREL			[64]
41	AVP_0354	7826699	TTWEAWDRAIAEYAARIEALIRASQEQQEKNEAELREL			[64]
42	AVP_0612	3012869	ELNKAKSDLEESKEWIRRSNQKLDSIGNWHQSSTT		N	[44]
43	AVP_0623	3012869	IELNKAKSDLEESKEWIRRSNQKLDSIGNWHQSST		N	[44]
44	AVP_0390	3012465	AAHLIDALYAEFLGGRVLTT			[69]
45	AVP_0068	10077657	HRWRKRWRKHRWRKRWRK			[70]
46	AVP_0061	10077657	KRWRKRWRKWRWRKRWRK			[70]
47	AVP_0055	15095345	RTRKRGRKRTRKRGRK			[71]
48	AVP_0191	14648299	RGGKIAGKIAKIAGKIAKIAGKIA			[72]
49	AVP_0134	3012869	ISIELNKAKSDLEESKEWIRRSNQKLDSIGNWHQS		N	[44]
50	AVP_0482	2959959	RRKKAAVALLPAVLLA			[73]
51	AVP_0483	2959959	RRKKAAVALLPAVLLAL			[73]
52	AVP_0302	2661722	KDLLFK		N	[74]
53	AVP_0113	3788062	GPPISLERLDVGTNLGNAIAKLEDAKELLESSDQI			[35]
54	AVP_0114	3788062	HRIDLGPPISLERLDVGTNLGNAIAKLEDAKELLE			[35]
55	AVP_0116	3788062	ISLERLDVGTNLGNAIAKLEDAKELLESSDQILRS			[35]
56	AVP_0288	12810954	CGECGGGHIVGRFCMVVRFLRLVFI			[75]
57	AVP_0289	9634230	CRCCELKSLCPTLMRVVRLLGLVLL		N	[76]
58	AVP_0138	6096849	LVFPSDEFDASISQVNEKINQSLAFIRKSDELLHN			[77]
59	AVP_0278	2833514	KWKLFKKIGIGKFLHVAKKF			[78]
60	AVP_0335	12886019	CDVIALLCHLNT			[79]
61	APD2_01209	7744961	RICRCICGRRICRCICGR			[80]

Subject sequences identified by polarity index method in APD2 database [1] and by AVPpred [2], where peptides have action only on virus. #1: (N) rejected peptide by SVM AVPpred algorithm. #2: (N) rejected peptide by polarity index method. Source: National Center for Biotechnology Information, US National Library of Medicine http://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE=Proteins in database: Swiss-Prot (swissprot), accessed March 20, 2013