Table 1.

Whole genome mapping statistics for the parents and bulks.

Sample	Consensus reference genomea	Total reads	Mapped reads	Mapping ratio (%)	Properly paired (%)	Average coverage (x)
R_bulk	#394-1-27-12	399,464,448	394,662,016	98.80	91.28	52.62
S_bulk	#394-1-27-12	342,955,380	338,758,574	98.78	91.30	45.17
R_bulk	Butterbush	399,492,596	394,578,517	98.77	91.25	52.61
S_bulk	Butterbush	342,981,424	338,708,743	98.75	91.29	45.16

^aThe consensus reference genomes were created by substituting alleles in the published squash reference genome C. moschata cv. Rifu with the respective parental alleles.