Table 2.
Quantitative trait loci (P < 0.05) associated with resistance to Phytophthora crown rot using either #394-1-27-12 or Butterbush as the consensus reference genome.
| Consensus reference genomea | Chromosome | Start (bp) | End (bp) | Interval (bp) | Position of most extreme ΔSNP (bp) | Peak ΔSNP index |
|---|---|---|---|---|---|---|
| Butterbush | 04 | 887,645 | 2,456,537 | 1,568,892 | 2,049,406 | -0.34 |
| 11 | 3,992,901 | 5,600,607 | 1,607,706 | 4,813,000 | 0.32 | |
| 14 | 15,209,401 | 15,797,562 | 588,161 | 15,797,562 | -0.30 | |
| #394-1-27-12 | 04 | 895,380 | 2,372,777 | 1,477,397 | 2,049,406 | 0.32 |
| 11 | 3,992,901 | 5,626,546 | 1,633,645 | 4,819,436 | −0.33 | |
| 14 | 15,161,862 | 15,797,562 | 635,700 | 15,797,562 | 0.30 |
aThe consensus reference genomes were created by substituting alleles in the published squash reference genome C. moschata cv. Rifu with the respective parental alleles.