Table 5.
Amino acids predicted in each cluster; A, B and C for panel 1 and panel 2 peptides as predicted using the genuine coordinates of the spike RBD
| A |
B |
C |
|||
|---|---|---|---|---|---|
| Panel 1 | Panel 2 | Panel 1 | Panel 2 | Panel 1a | Panel 2 |
| His445 | Cys323 | Cys323 | Phe364 | ||
| Asn457 | Pro324 | Pro324 | Cys366 | Cys366 | |
| Val458 | Val458 | Phe325 | Tyr367 | Tyr367 | |
| Pro459 | Pro459 | Glu327 | Val369 | Val369 | |
| Phe460 | Val328 | Ala398 | |||
| Pro462 | Pro462 | Ile345 | Ile345 | Cys419 | |
| Asp463 | Cys348 | Cys348 | Gln396 | ||
| Pro466 | Pro466 | Val349 | Val349 | Pro399 | Pro399 |
| Cys467 | Cys467 | Ala350 | Gln401 | ||
| Pro469 | Pro469 | Asp351 | Pro413 | Pro413 | |
| Pro470 | Pro470 | Tyr352 | Tyr352 | Asp414 | Phe416 |
| Ala471 | Ala371 | Asp415 | |||
| Leu472 | Leu472 | Met417 | |||
| Asn473 | Cys419 | ||||
| Cys474 | Cys474 | Leu448 | |||
| Tyr475 | Tyr475 | Pro450 | Pro450 | ||
| Trp476 | Phe451 | ||||
| Glu452 | |||||
| Leu499 | Leu499 | ||||
| Phe501 | |||||
Amino acids common to both panels are in bold. Amino acids that were predicted in the analysis of the theoretical model are highlighted in gray. The analysis was conducted when D=9 Å and ST=3.
a
The amino acids of cluster D are included in this list as well (see the text).