Table 1.
Drugscore probe atoms used to analyze the corresponding physicochemical property in Cavbase
| Drugscore atom type | Cavbase property | Hydrophobic/hydrophilic | Physicochemical interaction type |
|---|---|---|---|
| C.3 | Aliphatic | Hydrophobic | Aliphatic |
| C.ar | Aromatic | Hydrophobic | Aromatic |
| O.3 | Donor acceptor | Hydrophilic | Hydrogen bond acceptor and donor |
| O.2 | Acceptor | Hydrophilic | Hydrogen bond acceptor |
| N.3 | Donor | Hydrophilic | Hydrogen bond donor |