Supplementary Table 1.
Diagnoses Assessed for Association With Ultimate Development of Inflammatory Bowel Disease
| ICD category | ICD-10-CM | Label | ICD-9-CM | Grade |
|---|---|---|---|---|
| Abdominal pain | ||||
| AP | R100 | Abdominal and pelvic pain | 78907 | 1 |
| Asthma | ||||
| ASTHMA | J450 | Asthma | 493 | U |
| ASTHMA | J4500 | Asthma | 49300 | 1 |
| ASTHMA | J4501 | Asthma | 49301 | 1 |
| ASTHMA | J451 | Asthma | 493 | U |
| ASTHMA | J4510 | Asthma | 49310 | 1 |
| ASTHMA | J4511 | Asthma | 49311 | 1 |
| ASTHMA | J458 | Asthma | 493 | U |
| ASTHMA | J4580 | Asthma | 49300 | 1 |
| ASTHMA | J4581 | Asthma | 49301 | 1 |
| ASTHMA | J459 | Asthma | 493 | U |
| ASTHMA | J4590 | Asthma | 49390 | 1 |
| ASTHMA | J4591 | Asthma | 49391 | 1 |
| Bone and muscle inflammation | ||||
| BONEI | M6005 | Infective myositis, pelvic region and thigh | 7280 | 1 |
| BONEI | M6008 | Infective myositis, other | 7280 | 1 |
| BONEI | M8611 | Other acute osteomyelitis, shoulder region | 73001 | 1 |
| BONEI | M8612 | Other acute osteomyelitis, upper arm | 73002 | 1 |
| BONEI | M8616 | Other acute osteomyelitis, lower leg | 73006 | 1 |
| BONEI | M8617 | Other acute osteomyelitis, ankle and foot | 73007 | 1 |
| BONEI | M8618 | Other acute osteomyelitis, other site | 73008 | 1 |
| BONEI | M8625 | Subacute osteomyelitis, pelvic region and thigh | 73005 | 1 |
| BONEI | M8628 | Subacute osteomyelitis, other site | 73008 | 1 |
| BONEI | M8666 | Other chronic osteomyelitis, lower leg | 73016 | 1 |
| BONEI | M8667 | Other chronic osteomyelitis, ankle and foot | 73017 | 1 |
| BONEI | M8686 | Other osteomyelitis, lower leg | 73026 | 1 |
| BONEI | M8687 | Other osteomyelitis, ankle and foot | 73027 | 1 |
| BONEI | M8690 | Osteomyelitis, unspecified, multiple sites | 73029 | 2 |
| BONEI | M8692 | Osteomyelitis, unspecified, upper arm | 73022 | 2 |
| BONEI | M8693 | Osteomyelitis, unspecified, forearm | 73023 | 2 |
| BONEI | M8694 | Osteomyelitis, unspecified, hand | 73024 | 2 |
| BONEI | M8695 | Osteomyelitis, unspecified, pelvic region and thigh | 73025 | 2 |
| BONEI | M8696 | Osteomyelitis, unspecified, lower leg | 73026 | 2 |
| BONEI | M8697 | Osteomyelitis, unspecified, ankle and foot | 73027 | 2 |
| BONEI | M8698 | Osteomyelitis, unspecified, other site | 73028 | 2 |
| Cardiac infection | ||||
| CARDI | B332 | Viral carditis | 42989 | 2 |
| Failure to thrive | ||||
| FTT | R628 | Failure to thrive | 7834 | 2 |
| Fungal infections | ||||
| FUNI | B350 | Tinea barbae and tinea capitis | 1100 | 1 |
| FUNI | B354 | Tinea corporis | 1105 | 1 |
| FUNI | B369 | Superficial mycosis, unspecified | 1119 | 1 |
| FUNI | B370 | Candidal stomatitis | 1120 | 1 |
| FUNI | B371 | Pulmonary candidiasis | 1124 | 1 |
| FUNI | B372 | Candidiasis of skin and nail | 1123 | 1 |
| FUNI | B374 | Candidiasis of other urogenital sites | 1122 | 1 |
| FUNI | B377 | Candidal sepsis | 1125 | 1 |
| FUNI | B3788 | Candidiasis of other sites | 11289 | 1 |
| FUNI | B379 | Candidiasis, unspecified | 1129 | 1 |
| FUNI | B402 | Pulmonary blastomycosis, unspecified | 1160 | 1 |
| FUNI | B408 | Other forms of blastomycosis | 1160 | 1 |
| FUNI | B409 | Blastomycosis, unspecified | 1160 | 1 |
| FUNI | B488 | Other specified mycoses | 1179 | 1 |
| FUNI | B49 | Unspecified mycosis | 1179 | 1 |
| Genitourinary | ||||
| GENIT | N10 | Acute tubulo-interstitial nephritis | 59010 | 2 |
| GENIT | N309 | Cystitis, unspecified | 5959 | 1 |
| GENIT | N4590 | Epididymitis | 60490 | 1 |
| GENIT | N4591 | Orchitis | 60490 | 1 |
| GENIT | N700 | Acute salpingitis and oophoritis | 6140 | 1 |
| GENIT | N736 | Female pelvic peritoneal adhesions | 6146 | 1 |
| GENIT | N760 | Acute vaginitis | 61610 | 1 |
| GENIT | N762 | Acute vulvitis | 61610 | 1 |
| GENIT | N764 | Abscess of vulva | 6164 | 1 |
| Gastrointestinal infections | ||||
| GI | A010 | Typhoid fever | 020 | 1 |
| GI | A013 | Paratyphoid fever C | 023 | 1 |
| GI | A020 | Salmonella enteritis | 030 | 1 |
| GI | A029 | Salmonella infection, unspecified | 039 | 1 |
| GI | A031 | Shigellosis due to Shigella flexneri | 041 | 1 |
| GI | A039 | Shigellosis, unspecified | 049 | 1 |
| GI | A044 | Other intestinal Escherichia coli infections | 809 | 2 |
| GI | A045 | Campylobacter enteritis | 843 | 1 |
| GI | A047 | Enterocolitis due to Clostridium difficile | 845 | 1 |
| GI | A048 | Other specified bacterial intestinal infections | 849 | 2 |
| GI | A049 | Bacterial intestinal infection, unspecified | 085 | 1 |
| GI | A06 | Diarrhea (Amebic) | 060 | U |
| GI | A060 | Diarrhea (Amebic) | 060 | 1 |
| GI | A061 | Diarrhea (Amebic) | 061 | 1 |
| GI | A062 | Diarrhea (Amebic) | 062 | 1 |
| GI | A063 | Diarrhea (Amebic) | 068 | 1 |
| GI | A064 | Diarrhea (Amebic) | 063 | 1 |
| GI | A065 | Diarrhea (Amebic) | 064 | 1 |
| GI | A066 | Diarrhea (Amebic) | 065 | 1 |
| GI | A067 | Diarrhea (Amebic) | 066 | 1 |
| GI | A068 | Diarrhea (Amebic) | 068 | 1 |
| GI | A069 | Diarrhea (Amebic) | 069 | 1 |
| GI | A071 | Giardiasis [lambliasis] | 071 | 1 |
| GI | A079 | Diarrhea (Protozoal) | 079 | 1 |
| GI | A080 | Rotaviral enteritis | 861 | 1 |
| GI | A081 | Acute gastroenteropathy due to Norwalk agent | 863 | 2 |
| GI | A082 | Adenoviral enteritis | 862 | 1 |
| GI | A083 | Other viral enteritis | 869 | 2 |
| GI | A084 | Viral intestinal infection, unspecified | 088 | 1 |
| GI | A09 | Diarrhea and gastroenteritis of presumed infection | 093 | 2 |
| GI | A090 | Other and unspecified gastroenteritis and colitis | 5589 | U |
| GI | A099 | Gastroenteritis and colitis of unspecified origin | 5589 | U |
| GI | P783 | Diarrhea neonatal (transient) | 7778 | 2 |
| GI | R11 | Vomiting | 7870 | U |
| GI | R110 | Vomiting | 78703 | 1 |
| GI | R111 | Vomiting | 78702 | 1 |
| GI | R112 | Vomiting | 78703 | 1 |
| GI | R113 | Vomiting | 78701 | 1 |
| Gastrointestinal disease | ||||
| GID | K120 | Recurrent oral aphthae | 5282 | 1 |
| GID | K121 | Other forms of stomatitis | 5280 | 2 |
| GID | K122 | Cellulitis and abscess of mouth | 5283 | 2 |
| GID | K123 | Oral mucositis (ulcerative) | 52801 | U |
| GID | K20 | Oesophagitis | 53010 | 2 |
| GID | K210 | Gastro-oesophageal reflux disease with esophagitis | 53011 | 1 |
| GID | K219 | Gastro-oesophageal reflux disease without esophagitis | 53081 | 1 |
| GID | K222 | Oesophageal obstruction | 5303 | 1 |
| GID | K228 | Other specified diseases of oesophagus | 53089 | 2 |
| GID | K254 | Gastric ulcer, chronic or unspecified with hemorrhage | 53140 | 2 |
| GID | K290 | Acute haemorrhagic gastritis | 53501 | 1 |
| GID | K291 | Other acute gastritis | 53500 | 1 |
| GID | K295 | Chronic gastritis, unspecified | 53510 | 2 |
| GID | K296 | Other gastritis | 53540 | 2 |
| GID | K297 | Gastritis, unspecified | 53550 | 2 |
| GID | K298 | Duodenitis | 53560 | 2 |
| GID | K350 | Acute appendicitis with generalized peritonitis | 5400 | 1 |
| GID | K351 | Acute appendicitis with peritoneal abscess | 5401 | 1 |
| GID | K352 | Acute appendicitis with generalized peritonitis | 5400 | U |
| GID | K353 | Acute appendicitis with localized peritonitis | 5401 | U |
| GID | K358 | Acute appendicitis, other and unspecified | 5409 | U |
| GID | K359 | Acute appendicitis, unspecified | 5409 | 1 |
| GID | K650 | Acute peritonitis | 5672 | 1 |
| GID | K658 | Other peritonitis | 5678 | 2 |
| GID | K659 | Peritonitis, unspecified | 5679 | 1 |
| Hepatitis | ||||
| HEP | B179 | Acute viral hepatitis, unspecified | 5733 | U |
| HEP | B181 | Chronic viral hepatitis B without delta-agent | 7032 | 1 |
| HEP | B189 | Chronic viral hepatitis, unspecified | 709 | 1 |
| HEP | B199 | Unspecified viral hepatitis without hepatic coma | 709 | 1 |
| HEP | K754 | Autoimmune hepatitis | 5733 | 1 |
| HEP | K758 | Other specified inflammatory liver diseases | 5733 | 2 |
| HEP | K759 | Inflammatory liver disease, unspecified | 5733 | 1 |
| Herpes virus | ||||
| HV | B000 | Eczema herpeticum | 540 | 1 |
| HV | B001 | Herpes viral vesicular dermatitis | 5479 | 2 |
| HV | B002 | Herpes viral gingivitis and pharyngotonsilitis | 542 | 2 |
| HV | B004 | Herpes viral encephalitis | 543 | 1 |
| HV | B005 | Herpes viral ocular disease | 5440 | 2 |
| HV | B007 | Disseminated herpesviral disease | 545 | 1 |
| HV | B008 | Other forms of herpesviral infection | 546 | 2 |
| HV | B009 | Herpesviral infection, unspecified | 549 | 1 |
| HV | B010 | Varicella meningitis | 527 | 2 |
| HV | B011 | Varicella encephalitis | 520 | 1 |
| HV | B012 | Varicella pneumonia | 521 | 1 |
| HV | B018 | Varicella with other complications | 527 | 2 |
| HV | B019 | Varicella without complication | 529 | 1 |
| HV | B023 | Zoster ocular disease | 5320 | 2 |
| Intracranial infections | ||||
| II | A321 | Listerial meningitis and meningoencephalitis | 270 | 1 |
| II | A390 | Meningococcal meningitis | 360 | 1 |
| II | A858 | Other specified viral encephalitis | 498 | 1 |
| II | A86 | Unspecified viral encephalitis | 499 | 1 |
| II | A870 | Enteroviral meningitis | 479 | 2 |
| II | A871 | Adenoviral meningitis | 491 | 1 |
| II | A872 | Lymphocytic choriomeningitis | 490 | 1 |
| II | A879 | Viral meningitis, unspecified | 479 | 1 |
| II | B941 | Sequelae of viral encephalitis | 1390 | 1 |
| II | G000 | Haemophilus meningitis | 3200 | 1 |
| II | G001 | Pneumococcal meningitis | 3201 | 1 |
| II | G002 | Streptococcal meningitis | 3202 | 1 |
| II | G003 | Staphylococcal meningitis | 3203 | 1 |
| II | G008 | Other bacterial meningitis | 32089 | 2 |
| II | G009 | Bacterial meningitis, unspecified | 3209 | 1 |
| II | G01 | Meningitis in bacterial diseases classified elsewhere | 3207 | 2 |
| II | G020 | Meningitis in viral diseases classified elsewhere | 3212 | 1 |
| II | G030 | Nonpyogenic meningitis | 3220 | 1 |
| II | G038 | Meningitis due to other specified causes | 3229 | 2 |
| II | G039 | Meningitis, unspecified | 3229 | 1 |
| II | G040 | Acute disseminated encephalitis | 3235 | 2 |
| II | G042 | Bacterial meningoencephalitis and meningomyelitis, | 3209 | 1 |
| II | G048 | Other encephalitis, myelitis and encephalomyelitis | 3238 | 1 |
| II | G049 | Encephalitis, myelitis and encephalomyelitis, unspecified | 3239 | 1 |
| II | G050 | Encephalitis, myelitis and encephalomyelitis in ba | 3234 | 1 |
| II | G051 | Encephalitis, myelitis and encephalomyelitis | 3230 | 1 |
| II | G060 | Intracranial abscess and granuloma | 3240 | 1 |
| II | G061 | Intraspinal abscess and granuloma | 3241 | 1 |
| II | G062 | Extradural and subdural abscess, unspecified | 3249 | 1 |
| II | G08 | Intracranial and intraspinal phlebitis and thrombosis | 325 | 1 |
| Lymphadenitis | ||||
| LYMPH | L040 | Acute lymphadenitis of face, head and neck | 683 | 1 |
| LYMPH | L041 | Acute lymphadenitis of trunk | 683 | 1 |
| LYMPH | L042 | Acute lymphadenitis of upper limb | 683 | 1 |
| LYMPH | L043 | Acute lymphadenitis of lower limb | 683 | 1 |
| LYMPH | L048 | Acute lymphadenitis of other sites | 683 | 1 |
| Newborn infections | ||||
| NEWI | P027 | Fetus and newborn affected by chorioamnionitis | 7627 | 1 |
| NEWI | P360 | Sepsis of newborn due to streptococcus, group B | 7718 | 1 |
| NEWI | P361 | Sepsis of newborn due to other and unspecified streptococcus | 7718 | 1 |
| NEWI | P362 | Sepsis of newborn due to Staphylococcus aureus | 7718 | 1 |
| NEWI | P363 | Sepsis of newborn due to other and unspecified staphylococcus | 7718 | 1 |
| NEWI | P364 | Sepsis of newborn due to Escherichia coli | 7718 | 1 |
| NEWI | P368 | Other bacterial sepsis of newborn | 7718 | 1 |
| NEWI | P369 | Bacterial sepsis of newborn, unspecified | 7718 | 1 |
| NEWI | P38 | Omphalitis of newborn with or without mild hemorrhage | 7714 | 1 |
| NEWI | P390 | Neonatal infective mastitis | 7715 | 1 |
| NEWI | P391 | Neonatal conjunctivitis and dacryocystitis | 7716 | 1 |
| NEWI | P393 | Neonatal urinary tract infection | 7718 | 1 |
| NEWI | P394 | Neonatal skin infection | 7718 | 2 |
| NEWI | P398 | Other specified infections specific to the perinatal period | 7718 | 1 |
| NEWI | P77 | Necrotizing enterocolitis of fetus and newborn | 7775 | 1 |
| Ocular infections | ||||
| OI | B303 | Acute epidemic haemorrhagic conjunctivitis | 774 | 1 |
| OI | B309 | Viral conjunctivitis, unspecified | 7799 | 1 |
| Oral, pharyngeal sinus infections | ||||
| OPSI | B084 | Enteroviral vesicular stomatitis with exanthem | 743 | 1 |
| OPSI | B085 | Enteroviral vesicular pharyngitis | 740 | 1 |
| OPSI | B250 | Cytomegaloviral pneumonitis | 785 | 1 |
| OPSI | B251 | Cytomegaloviral hepatitis | 785 | 1 |
| OPSI | B258 | Other cytomegaloviral diseases | 785 | 1 |
| OPSI | B259 | Cytomegaloviral disease, unspecified | 785 | 1 |
| OPSI | B270 | Gammaherpesviral mononucleosis | 075 | 1 |
| OPSI | B279 | Infectious mononucleosis, unspecified | 075 | 1 |
| OPSI | J00 | Acute nasopharyngitis [common cold] | 460 | 1 |
| OPSI | J010 | Acute maxillary sinusitis | 4610 | 1 |
| OPSI | J012 | Acute ethmoidal sinusitis | 4612 | 1 |
| OPSI | J013 | Acute sphenoidal sinusitis | 4613 | 1 |
| OPSI | J019 | Acute sinusitis, unspecified | 4619 | 1 |
| OPSI | J020 | Streptococcal pharyngitis | 340 | 1 |
| OPSI | J028 | Acute pharyngitis due to other specified organisms | 462 | 1 |
| OPSI | J029 | Acute pharyngitis, unspecified | 462 | 1 |
| OPSI | J030 | Streptococcal tonsillitis | 340 | 1 |
| OPSI | J039 | Acute tonsillitis, unspecified | 463 | 1 |
| OPSI | J040 | Acute laryngitis | 4640 | 1 |
| OPSI | J041 | Acute tracheitis | 46410 | 1 |
| OPSI | J050 | Acute obstructive laryngitis [croup] | 4644 | 1 |
| OPSI | J051 | Acute epiglottitis | 46430 | 1 |
| Otitis media | ||||
| OTIT | H65 | Nonsuportive otitis media∗ | unknown | U |
| OTIT | H650 | Nonsuportive otitis media∗ | 38101 | 1 |
| OTIT | H651 | Nonsuportive otitis media∗ | 38100 | 2 |
| OTIT | H652 | Nonsuportive otitis media∗ | 38110 | 2 |
| OTIT | H653 | Nonsuportive otitis media∗ | 38120 | 2 |
| OTIT | H654 | Nonsuportive otitis media∗ | 3813 | 1 |
| OTIT | H659 | Nonsuportive otitis media∗ | 3814 | 1 |
| OTIT | H66 | Otitis media∗ | unknown | U |
| OTIT | H660 | Otitis media∗ | 38200 | 2 |
| OTIT | H661 | Otitis media∗ | 3821 | 1 |
| OTIT | H662 | Otitis media∗ | 3822 | 1 |
| OTIT | H663 | Otitis media∗ | 3823 | 1 |
| OTIT | H664 | Otitis media∗ | 3824 | 1 |
| OTIT | H669 | Otitis media∗ | 3829 | 1 |
| OTIT | H67 | Otitis media class elsewhere∗ | UNK | U |
| OTIT | H670 | Otitis media class elsewhere∗ | 38202 | 3 |
| OTIT | H671 | Otitis media class elsewhere∗ | 38202 | 1 |
| OTIT | H678 | Otitis media class elsewhere∗ | 38202 | 3 |
| Pancreatitis | ||||
| PANC | K85 | Acute pancreatitis | 5770 | U |
| PANC | K850 | Idiopathic acute pancreatitis | 5770 | 2 |
| PANC | K851 | Biliary acute pancreatitis | 5770 | 2 |
| PANC | K858 | Other acute pancreatitis | 5770 | 2 |
| PANC | K859 | Acute pancreatitis, unspecified | 5770 | 2 |
| Parasitic infections | ||||
| PARI | B508 | Other severe and complicated Plasmodium falciparum | 840 | 1 |
| PARI | B509 | Plasmodium falciparum malaria, unspecified | 840 | 1 |
| PARI | B519 | Plasmodium vivax malaria without complication | 841 | 1 |
| PARI | B54 | Unspecified malaria | 846 | 1 |
| PARI | B588 | Toxoplasmosis with other organ involvement | 1307 | 2 |
| PARI | B589 | Toxoplasmosis, unspecified | 1309 | 1 |
| PARI | B829 | Intestinal parasitism, unspecified | 129 | 1 |
| PARI | B830 | Visceral larva migrans | 1280 | 1 |
| PARI | B850 | Pediculosis due to Pediculus humanus capitis | 1320 | 1 |
| PARI | B851 | Pediculosis due to Pediculus humanus corporis | 1321 | 1 |
| PARI | B852 | Pediculosis, unspecified | 1329 | 1 |
| PARI | B86 | Scabies | 1330 | 1 |
| PARI | B878 | Myiasis of other sites | 1340 | 1 |
| PARI | B89 | Unspecified parasitic disease | 1369 | 1 |
| Pulmonary infections (bacterial) | ||||
| PI | A1501 | Tuberculosis of lung, confirmed by sputum microscopy | 1193 | 2 |
| PI | A151 | Tuberculosis of lung, confirmed by culture only | 1194 | 2 |
| PI | A1531 | Tuberculosis of lung, confirmed by unspecified measures | 1190 | 1 |
| PI | A157 | Primary respiratory tuberculosis, confirmed bacteriology | 1090 | 2 |
| PI | A1611 | Tuberculosis of lung, bacteriological and histological confirmation | 1191 | 1 |
| PI | A162 | Tuberculosis of lung, without mention of bacteriological and histological confirmation | 119 | U |
| PI | A1621 | Tuberculosis of lung, without mention of bacteriol | 1196 | 2 |
| PI | A167 | Primary respiratory tuberculosis | 1196 | 2 |
| PI | A169 | Respiratory tuberculosis unspecified | 119 | U |
| PI | A1690 | Respiratory tuberculosis unspecified | 1196 | 2 |
| PI | A170 | Tuberculous meningitis | 1300 | 2 |
| PI | A178 | Other tuberculosis of nervous system | 1380 | 2 |
| PI | A182 | Tuberculous peripheral lymphadenopathy | 1720 | 2 |
| PI | A370 | Whooping cough due to Bordetella pertussis | 330 | 1 |
| PI | A371 | Whooping cough due to Bordetella parapertussis | 331 | 1 |
| PI | A379 | Whooping cough, unspecified | 339 | 1 |
| PI | J068 | Other acute upper respiratory infections | 4658 | 1 |
| PI | J069 | Acute upper respiratory infection, unspecified | 4659 | 1 |
| PI | J13 | Pneumonia due to Streptococcus pneumoniae | 481 | 2 |
| PI | J14 | Pneumonia due to Haemophilus influenzae | 4822 | 1 |
| PI | J150 | Pneumonia due to Klebsiella pneumoniae | 4820 | 1 |
| PI | J151 | Pneumonia due to Pseudomonas | 4821 | 1 |
| PI | J152 | Pneumonia due to Staphylococcus | 48240 | 1 |
| PI | J153 | Pneumonia due to Streptococcus, group B | 48232 | 1 |
| PI | J154 | Pneumonia due to other streptococci | 48239 | 2 |
| PI | J156 | Pneumonia due to other Gram-negative bacteria | 48283 | 1 |
| PI | J157 | Pneumonia due to Mycoplasma pneumoniae | 4830 | 1 |
| PI | J158 | Other bacterial pneumonia | 48289 | 1 |
| PI | J159 | Bacterial pneumonia, unspecified | 4829 | 1 |
| PI | J170 | Pneumonia in bacterial diseases classified elsewhere | 4848 | 2 |
| PI | J171 | Pneumonia in viral diseases classified elsewhere | 4848 | 2 |
| PI | J18 | Bronchopneumonia | 481 | U |
| PI | J180 | Bronchopneumonia, unspecified | 485 | 1 |
| PI | J181 | Lobar pneumonia, unspecified | 481 | 1 |
| PI | J182 | Bronchopneumonia | 514 | 1 |
| PI | J188 | Bronchopneumonia | 486 | 1 |
| PI | J189 | Pneumonia, unspecified | 486 | 1 |
| PI | J20 | Acute bronchitis | 4660 | U |
| PI | J200 | Acute bronchitis | 4660 | 1 |
| PI | J201 | Acute bronchitis | 4660 | 1 |
| PI | J202 | Acute bronchitis | 4660 | 1 |
| PI | J203 | Acute bronchitis | 4660 | 1 |
| PI | J204 | Acute bronchitis | 4660 | 1 |
| PI | J205 | Acute bronchitis | 4660 | 1 |
| PI | J206 | Acute bronchitis | 4660 | 1 |
| PI | J207 | Acute bronchitis | 4660 | 1 |
| PI | J310 | Chronic rhinitis | 4720 | 1 |
| PI | J312 | Chronic pharyngitis | 4721 | 1 |
| PI | J320 | Chronic maxillary sinusitis | 4730 | 1 |
| PI | J322 | Chronic ethmoidal sinusitis | 4732 | 1 |
| PI | J329 | Chronic sinusitis, unspecified | 4739 | 1 |
| PI | J47 | Bronchiectasis | 494 | 1 |
| PI | R05 | Cough | 7862 | 1 |
| Systemic bacterial infections, primary site not specified | ||||
| SBNOS | A191 | Acute miliary tuberculosis of multiple sites | 1800 | 2 |
| SBNOS | A199 | Miliary tuberculosis, unspecified | 1890 | 2 |
| SBNOS | A400 | Sepsis due to streptococcus, group A | 380 | 1 |
| SBNOS | A401 | Sepsis due to streptococcus, group B | 380 | 1 |
| SBNOS | A403 | Sepsis due to Streptococcus pneumoniae | 382 | 1 |
| SBNOS | A408 | Other streptococcal sepsis | 380 | 1 |
| SBNOS | A409 | Streptococcal sepsis, unspecified | 380 | 1 |
| SBNOS | A410 | Sepsis due to Staphylococcus aureus | 3810 | 1 |
| SBNOS | A411 | Sepsis due to other specified staphylococcus | 3819 | 1 |
| SBNOS | A412 | Sepsis due to unspecified staphylococcus | 3810 | 1 |
| SBNOS | A413 | Sepsis due to Haemophilus influenzae | 3841 | 1 |
| SBNOS | A4150 | Sepsis due to Escherichia coli [E coli] | 3842 | 1 |
| SBNOS | A4151 | Sepsis due to Pseudomonas | 3843 | 1 |
| SBNOS | A4158 | Sepsis due to other Gram-negative organisms | 3849 | 1 |
| SBNOS | A4180 | Sepsis due to Enterococcus | 388 | 1 |
| SBNOS | A4188 | Other specified sepsis | 388 | 1 |
| SBNOS | A419 | Sepsis, unspecified | 389 | 1 |
| SBNOS | A490 | Staphylococcal infection, unspecified site | 4111 | 1 |
| SBNOS | A491 | Streptococcal infection, unspecified site | 4109 | 1 |
| SBNOS | A492 | Haemophilus influenzae infection, unspecified site | 415 | 1 |
| SBNOS | A498 | Other bacterial infections of unspecified site | 4189 | 1 |
| SBNOS | A499 | Bacterial infection, unspecified | 419 | 1 |
| SBNOS | A689 | Relapsing fever, unspecified | 879 | 1 |
| SBNOS | B948 | Sequelae of other specified infectious and parasites | 1398 | 1 |
| SBNOS | B950 | Streptococcus, group A, as the cause of diseases | 4101 | 1 |
| SBNOS | B956 | Staphylococcus aureus as the cause of diseases | 4111 | 1 |
| SBNOS | B961 | Klebsiella pneumoniae [K pneumoniae] as the cause | 413 | 1 |
| SBNOS | B962 | Escherichia coli [E coli] as the cause of disease | 414 | 1 |
| SBNOS | B963 | Haemophilus influenzae [H influenzae] as the cause | 415 | 1 |
| SBNOS | B9680 | Helicobacter pylori [H pylori] as the cause of disease | 4186 | 1 |
| SBNOS | B9681 | Enterococcus as the cause of diseases classified | 4104 | 1 |
| SBNOS | B9688 | Other specified bacterial agents as the cause of disease | 4189 | 1 |
| Respiratory infections (viral) | ||||
| RI | J09 | Influenza due to certain identified influenza virus | 4878 | 1 |
| RI | J100 | Influenza with pneumonia, other influenza virus identified | 4870 | 1 |
| RI | J101 | Influenza with other respiratory manifestations | 4871 | 1 |
| RI | J108 | Influenza with other manifestations | 4878 | 1 |
| RI | J110 | Influenza with pneumonia, virus not identified | 4870 | 1 |
| RI | J111 | Influenza with other respiratory manifestations | 4871 | 1 |
| RI | J118 | Influenza with other manifestations, virus not identified | 4878 | 1 |
| RI | J120 | Adenoviral pneumonia | 4800 | 1 |
| RI | J121 | Respiratory syncytial virus pneumonia | 4801 | 1 |
| RI | J122 | Parainfluenza virus pneumonia | 4802 | 1 |
| RI | J123 | Human metapneumovirus pneumonia | 4808 | U |
| RI | J128 | Other viral pneumonia | 4808 | 1 |
| RI | J129 | Viral pneumonia, unspecified | 4809 | 1 |
| RI | J40 | Bronchitis, not specified | 490 | 1 |
| RI | J41 | Simple and mucopurulent chronic bronchitis | 4911 | U |
| RI | J410 | Simple and mucopurulent chronic bronchitis | 4910 | 1 |
| RI | J411 | Simple and mucopurulent chronic bronchitis | 4911 | 1 |
| RI | J418 | Simple and mucopurulent chronic bronchitis | 4918 | 2 |
| RI | J42 | Unspecified chronic bronchitis | 4919 | 1 |
| Skin infection | ||||
| SI | A281 | Cat-scratch disease | 783 | 1 |
| SI | A46 | Erysipelas | 35 | 1 |
| SI | B081 | Molluscum contagiosum | 780 | 1 |
| SI | L00 | Staphylococcal scalded skin syndrome | 69581 | 2 |
| SI | L010 | Impetigo [any organism] [any site] | 684 | 1 |
| SI | L011 | Impetiginization of other dermatoses | 684 | 1 |
| SI | L020 | Cutaneous abscess, furuncle and carbuncle of face | 6800 | 1 |
| SI | L021 | Cutaneous abscess, furuncle and carbuncle of neck | 6801 | 1 |
| SI | L022 | Cutaneous abscess, furuncle and carbuncle of trunk | 6802 | 1 |
| SI | L023 | Cutaneous abscess, furuncle and carbuncle of buttock | 6805 | 1 |
| SI | L024 | Cutaneous abscess, furuncle and carbuncle of limb | 6803 | 1 |
| SI | L028 | Cutaneous abscess, furuncle and carbuncle of other | 6808 | 1 |
| SI | L0300 | Cellulitis of finger | 68100 | 1 |
| SI | L0301 | Cellulitis of toe | 68110 | 1 |
| SI | L0310 | Cellulitis of upper limb | 6823 | 1 |
| SI | L0311 | Cellulitis of lower limb | 6826 | 1 |
| SI | L032 | Cellulitis of face | 6820 | 1 |
| SI | L0330 | Cellulitis of chest wall | 6822 | 1 |
| SI | L0331 | Cellulitis of abdominal wall | 6822 | 1 |
| SI | L0332 | Cellulitis of umbilicus | 6822 | 1 |
| SI | L0333 | Cellulitis of groin | 6822 | 1 |
| SI | L0334 | Cellulitis of back [any part except buttock] | 6822 | 1 |
| SI | L0335 | Cellulitis of buttock | 6825 | 1 |
| SI | L0336 | Cellulitis of perineum | 6822 | 1 |
| SI | L0339 | Cellulitis of trunk, unspecified | 6822 | 1 |
| SI | L038 | Cellulitis of other sites | 6828 | 2 |
| SI | L039 | Cellulitis, unspecified | 6829 | 1 |
| SI | L050 | Pilonidal cyst with abscess | 6850 | 1 |
| SI | L059 | Pilonidal cyst without abscess | 6851 | 1 |
| SI | L080 | Pyoderma | 68609 | 1 |
| SI | L088 | Other specified local infections of skin and subcutaneous tissue | 6868 | 1 |
| SI | L089 | Local infection of skin and subcutaneous tissue | 6869 | 1 |
| Congenital infection STI-related infection | ||||
| STI | A630 | Anogenital (venereal) warts | 7819 | 1 |
| STI | A749 | Chlamydial infection, unspecified | 7888 | 2 |
| STI | A500 | Early congenital syphilis, symptomatic | 900 | 2 |
| CONI | A509 | Congenital syphilis, unspecified | 909 | 1 |
| Systemic viral infection primary site not specified | ||||
| SVNOS | B088 | Other specified viral infections characterized by | 7889 | 2 |
| SVNOS | B09 | Unspecified viral infection characterized by skin | 579 | 2 |
| SVNOS | B340 | Adenovirus infection, unspecified site | 790 | 1 |
| SVNOS | B341 | Enterovirus infection, unspecified site | 7889 | 2 |
| SVNOS | B348 | Other viral infections of unspecified site | 7989 | 1 |
| SVNOS | B349 | Viral infection, unspecified | 7999 | 2 |
| SVNOS | B970 | Adenovirus as the cause of diseases | 790 | 1 |
| SVNOS | B971 | Enterovirus as the cause of diseases | 7989 | 2 |
| SVNOS | B972 | Coronavirus as the cause of diseases | 7989 | 2 |
| SVNOS | B974 | Respiratory syncytial virus as the cause of disease | 796 | 1 |
| SVNOS | B9780 | Parainfluenza virus as the cause of diseases | 7989 | 2 |
| SVNOS | B9788 | Other viral agents as the cause of diseases classified | 7989 | 1 |
| Miscellaneous | ||||
| MIS | A227 | Anthrax sepsis | 223 | 1 |
| MIS | A312 | Disseminated mycobacterium avium-intracellulare | 312 | 1 |
| MIS | A319 | Mycobacterial infection, unspecified | 319 | 1 |
| Meningococcus | A398 | Other meningococcal infections | 3689 | 2 |
| MIS | A829 | Rabies, unspecified | 071 | 1 |
BONEI, bone inflammation; CARDI, cardiac inflammation; FUNI, fungal infection; GENIT, genitourinary; GI, Gastrointestinal infections; GID, gastrointestinal disease.