Table 3. Software tools used.

Software tool	Version	Source
Falcon-unzip	falcon-kit 1.2.2	( Chin et al., 2016)
purge_dups	1.0.0	( Guan et al., 2020)
3D-DNA	180419	( Dudchenko et al., 2018)
scaff10x	4.2	https://github.com/wtsi-hpag/Scaff10X
arrow	GenomicConsensus 2.3.3	https://github.com/PacificBiosciences/GenomicConsensus
longranger align	2.2.2	https://support.10xgenomics.com/genome-exome/software/ pipelines/latest/advanced/other-pipelines
freebayes	v1.1.0-3-g961e5f3	( Garrison & Marth, 2012)
bcftools consensus	1.9	http://samtools.github.io/bcftools/bcftools.html
gEVAL	2016	( Chow et al., 2016)
BlobToolKit	1	( Challis et al., 2019)