Table 4.
NP-Specific Membrane-Associated Markers Compared to AF and AC in Primary Cell Expression Datasets.
| Gene | IDa | AC Meanb | AF Meanb | NP Meanb | FCc | FCd |
|---|---|---|---|---|---|---|
| ANKRD10 | 55608 | 687.4 | 909.1 | 2267.0 | 3.3 | 2.5 |
| ANXA2 | 302 | 18.5 | 23.5 | 380.8 | 20.6 | 16.2 |
| ATP6V0E1 | 8992 | 35.4 | 37.7 | 124.4 | 3.5 | 3.3 |
| C11orf1 | 64776 | 50.3 | 48.5 | 178.3 | 3.5 | 3.7 |
| C9orf91 | 203197 | 68.0 | 75.3 | 276.3 | 4.1 | 3.7 |
| CA12 | 771 | 71.3 | 134.4 | 2726.9 | 38.2 | 20.3 |
| CLDN11 | 5010 | 19.3 | 47.2 | 204.2 | 10.6 | 4.3 |
| CLIP4 | 79745 | 98.1 | 63.9 | 207.2 | 2.1 | 3.2 |
| DKFZp451A211 | 400169 | 505.2 | 989.2 | 2828.0 | 5.6 | 2.9 |
| DUSP6 | 1848 | 533.6 | 680.5 | 2172.2 | 4.1 | 3.2 |
| DYRK2 | 8445 | 238.8 | 247.3 | 746.3 | 3.1 | 3.0 |
| EFNA1 | 1942 | 909.3 | 2144.1 | 6752.4 | 7.4 | 3.1 |
| F3 | 2152 | 68.8 | 55.4 | 263.1 | 3.8 | 4.8 |
| FAM134A | 79137 | 173.5 | 188.9 | 408.8 | 2.4 | 2.2 |
| FGFR2 | 2263 | 25.9 | 26.5 | 109.7 | 4.2 | 4.1 |
| FLRT1 | 23769 | 79.5 | 90.6 | 243.3 | 3.1 | 2.7 |
| FUS | 2521 | 43.2 | 41.3 | 105.2 | 2.4 | 2.5 |
| GPR153 | 387509 | 319.2 | 310.1 | 686.7 | 2.2 | 2.2 |
| GRB10 | 2887 | 179.9 | 154.4 | 651.0 | 3.6 | 4.2 |
| HS6ST3 | 266722 | 54.2 | 183.9 | 494.7 | 9.1 | 2.7 |
| KHDRBS3 | 10656 | 164.8 | 289.8 | 1349.9 | 8.2 | 4.7 |
| KIAA1217 | 56243 | 39.9 | 184.3 | 529.1 | 13.2 | 2.9 |
| LDLR | 3949 | 140.3 | 148.1 | 339.9 | 2.4 | 2.3 |
| LRRFIP1 | 9208 | 398.6 | 499.9 | 1150.3 | 2.9 | 2.3 |
| NCAM1 | 4684 | 49.2 | 43.7 | 116.8 | 2.4 | 2.7 |
| NETO2 | 81831 | 27.7 | 48.6 | 122.4 | 4.4 | 2.5 |
| NNMT | 4837 | 89.5 | 52.7 | 263.0 | 2.9 | 5.0 |
| ORAI3 | 93129 | 431.5 | 1058.3 | 2239.2 | 5.2 | 2.1 |
| PGK1 | 5230 | 39.1 | 54.9 | 471.6 | 12.1 | 8.6 |
| PSMB4 | 5692 | 1084.0 | 800.1 | 2256.8 | 2.1 | 2.8 |
| RP1-21O18.1 | 23254 | 198.8 | 153.9 | 422.4 | 2.1 | 2.7 |
| RPL38 | 6169 | 1114.4 | 863.3 | 6333.9 | 5.7 | 7.3 |
| RPLP2 | 6181 | 234.9 | 194.1 | 739.6 | 3.1 | 3.8 |
| RRAD | 6236 | 234.2 | 247.8 | 745.4 | 3.2 | 3.0 |
| SLC16A3 | 9123 | 33.5 | 42.1 | 169.9 | 5.1 | 4.0 |
| SLC2A1 | 6513 | 353.9 | 851.8 | 2506.6 | 7.1 | 2.9 |
| SLC2A3 | 6515 | 410.9 | 437.5 | 1330.5 | 3.2 | 3.0 |
| SLC44A1 | 23446 | 86.6 | 208.1 | 477.2 | 5.5 | 2.3 |
| SLC6A6 | 6533 | 264.9 | 185.9 | 569.8 | 2.2 | 3.1 |
| STX3 | 6809 | 356.4 | 327.7 | 746.2 | 2.1 | 2.3 |
| TMEFF2 | 23671 | 271.5 | 321.8 | 2501.6 | 9.2 | 7.8 |
| TMEM200A | 114801 | 61.7 | 53.1 | 183.0 | 3.0 | 3.4 |
| TNS1 | 7145 | 2142.0 | 3537.6 | 7840.3 | 3.7 | 2.2 |
| TRPM8 | 79054 | 31.6 | 65.0 | 269.2 | 8.5 | 4.1 |
| ZNF395 | 55893 | 1956.3 | 4013.4 | 9607.8 | 4.9 | 2.4 |
| ZNF791 | 163049 | 711.1 | 1397.7 | 3029.9 | 4.3 | 2.2 |
a
ENTREZ Gene ID.
b
Differentially expressed genes were determined by adjusted P value <0.05, fold change >2.0, and expression in NP >100 (arbitrary units; see Methods section for details).26 Marker genes overlapping with those in Table 4 are printed in bold.
c
Fold change (NP/AC).
d
Fold change (NP/AF).