Table 2. Example 3D neuronal Sholl output.
Skeleton ID | Branch Length | V1x | V1y | V1z | V2x | V2y | V2z | Branch Type | Euclidean Distance | Running Avg. Length | Max Thickness | Avg. Thickness | Avg. Intensity | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 14.41344 | 214.08 | 261.44 | 28 | 225.28 | 255.04 | 11 | INT | 21.3401 | 13.0496 | 0.90496 | 0.58016 | 255 |
2 | 1 | 9.32544 | 202.56 | 271.04 | 35 | 209.92 | 267.2 | 30 | INT | 9.690986 | 8.14912 | 1.15392 | 0.64672 | 255 |
3 | 1 | 9.21568 | 189.44 | 283.2 | 13 | 195.2 | 277.12 | 32 | INT | 20.76401 | 8.35104 | 1.01184 | 0.6368 | 255 |
4 | 1 | 8.7632 | 167.04 | 302.4 | 66 | 173.44 | 297.6 | 78 | TER | 14.42221 | 8.21696 | 1.15392 | 0.62528 | 255 |
5 | 1 | 8.63072 | 183.68 | 288.32 | 27 | 189.44 | 283.2 | 31 | INT | 8.682857 | 6.5152 | 1.43104 | 0.88224 | 255 |
6 | 1 | 7.85792 | 231.36 | 250.56 | 2 | 236.8 | 246.08 | 32 | INT | 30.81662 | 6.50496 | 0.90496 | 0.49824 | 255 |
7 | 1 | 7.8032 | 178.88 | 293.12 | 8 | 183.68 | 288.32 | 31 | INT | 23.98083 | 6.81152 | 1.35776 | 0.88416 | 255 |
8 | 1 | 7.67072 | 209.92 | 267.2 | 21 | 214.08 | 261.44 | 21 | INT | 7.105153 | 5.98944 | 0.71552 | 0.50752 | 255 |
9 | 1 | 7.27296 | 281.6 | 214.4 | 36 | 287.68 | 211.52 | 36 | PRI | 6.727615 | 5.76128 | 0.64 | 0.41536 | 255 |
10 | 1 | 6.95296 | 197.44 | 274.56 | 46 | 202.56 | 271.04 | 37 | PRI | 10.9364 | 5.5104 | 1.01184 | 0.6528 | 255 |
11 | 1 | 6.5552 | 273.92 | 216.96 | 45 | 279.68 | 215.04 | 47 | PRI | 6.392496 | 5.6672 | 0.71552 | 0.47936 | 255 |
12 | 1 | 5.80544 | 174.72 | 296.64 | 3 | 178.88 | 293.12 | 9 | INT | 8.105307 | 5.05984 | 0.96 | 0.45472 | 255 |
13 | 1 | 5.78272 | 260.16 | 223.68 | 20 | 264.96 | 221.76 | 2 | INT | 18.72769 | 3.84768 | 0.64 | 0.41056 | 255 |
14 | 1 | 5.2752 | 255.68 | 226.24 | 38 | 259.2 | 223.36 | 46 | PRI | 9.202434 | 4.32896 | 0.64 | 0.44416 | 255 |
15 | 1 | 5.19456 | 243.52 | 235.84 | 44 | 247.36 | 233.92 | 47 | PRI | 5.237557 | 3.62752 | 0.64 | 0.50848 | 255 |
16 | 1 | 5.08768 | 225.28 | 255.04 | 40 | 228.8 | 252.16 | 48 | PRI | 9.202434 | 3.96832 | 0.96 | 0.68384 | 255 |
17 | 1 | 4.76768 | 228.8 | 252.16 | 44 | 230.08 | 249.28 | 36 | PRI | 8.598418 | 3.29312 | 0.96 | 0.55904 | 255 |
18 | 1 | 4.50272 | 266.24 | 220.8 | 38 | 269.76 | 218.88 | 49 | PRI | 11.70798 | 3.78944 | 0.64 | 0.4864 | 255 |
19 | 1 | 3.9952 | 240 | 241.28 | 40 | 242.56 | 238.72 | 41 | PRI | 3.755955 | 3.10688 | 0.64 | 0.51424 | 255 |
20 | 1 | 3.9952 | 242.56 | 238.72 | 1 | 243.52 | 235.84 | 25 | INT | 24.19124 | 3.03104 | 0.64 | 0.55328 | 255 |
21 | 1 | 3.6752 | 195.2 | 277.12 | 15 | 197.44 | 274.56 | 18 | INT | 4.535548 | 2.82944 | 0.96 | 0.56256 | 255 |
22 | 1 | 3.6752 | 251.84 | 229.44 | 1 | 254.4 | 227.2 | 11 | INT | 10.56273 | 2.76704 | 0.71552 | 0.6736 | 255 |
23 | 1 | 3.28384 | 236.8 | 246.08 | 15 | 238.72 | 243.52 | 24 | INT | 9.551963 | 1.35776 | 0.64 | 0.4176 | 255 |
24 | 1 | 2.95776 | 247.36 | 233.92 | 17 | 248 | 231.68 | 1 | INT | 16.16871 | 2.25632 | 0.64 | 0.4224 | 255 |
25 | 1 | 2.95776 | 270.72 | 219.2 | 34 | 273.28 | 218.24 | 9 | INT | 25.14906 | 1.6336 | 0.90496 | 0.5296 | 255 |
26 | 1 | 2.50496 | 292.48 | 209.28 | 73 | 290.24 | 209.92 | 64 | TER | 9.296623 | 2.2992 | 0.64 | 0.38464 | 255 |
27 | 1 | 2.45024 | 236.8 | 246.08 | 44 | 236.8 | 246.08 | 43 | PRI | 1 | 1.35776 | 0.45248 | 0.40832 | 255 |
28 | 1 | 2.39328 | 230.08 | 249.28 | 46 | 231.36 | 250.56 | 38 | PRI | 8.202244 | 1.35776 | 0.71552 | 0.45216 | 255 |
29 | 1 | 2.31776 | 260.48 | 221.76 | 52 | 260.16 | 223.68 | 72 | TER | 20.0945 | 2.19488 | 0.64 | 0.41056 | 255 |
30 | 1 | 2.26048 | 228.8 | 252.16 | 6 | 230.4 | 250.88 | 30 | INT | 24.08731 | 0.99776 | 0.96 | 0.69216 | 255 |
31 | 1 | 2.18496 | 241.6 | 243.52 | 72 | 239.68 | 242.88 | 58 | TER | 14.14553 | 2.0096 | 0.45248 | 0.34208 | 255 |
32 | 1 | 2.18496 | 279.68 | 215.04 | 28 | 281.6 | 214.4 | 32 | INT | 4.482856 | 1.01504 | 0.71552 | 0.45216 | 255 |
33 | 1 | 2.10432 | 183.68 | 286.4 | 71 | 183.68 | 288.32 | 65 | TER | 6.299714 | 2.15968 | 0.96 | 0.54624 | 255 |
34 | 1 | 1.99776 | 239.68 | 242.88 | 21 | 240 | 241.28 | 18 | INT | 3.415026 | 1.26272 | 0.64 | 0.46624 | 255 |
35 | 1 | 1.99776 | 250.24 | 230.4 | 20 | 251.84 | 229.44 | 33 | INT | 13.13323 | 1.42016 | 0.64 | 0.54624 | 255 |
36 | 1 | 1.86496 | 173.44 | 297.6 | 3 | 174.72 | 296.64 | 6 | INT | 3.4 | 0.97952 | 1.31936 | 1.07072 | 255 |
37 | 1 | 1.86496 | 254.4 | 227.2 | 34 | 255.68 | 226.24 | 19 | INT | 15.08509 | 0.99776 | 0.71552 | 0.57888 | 255 |
38 | 1 | 1.73248 | 211.52 | 266.88 | 66 | 209.92 | 267.2 | 46 | TER | 20.06645 | 1.78752 | 0.45248 | 0.38624 | 255 |
39 | 1 | 1.73248 | 288.96 | 210.56 | 11 | 290.24 | 209.92 | 8 | INT | 3.323853 | 1.29728 | 0.64 | 0.576 | 255 |
40 | 1 | 1.67776 | 264.96 | 221.76 | 7 | 266.24 | 220.8 | 29 | INT | 22.05811 | 0.90496 | 0.71552 | 0.6176 | 255 |
41 | 1 | 1.67776 | 249.28 | 231.68 | 33 | 250.24 | 230.4 | 35 | INT | 2.56125 | 0.45248 | 0.71552 | 0.65888 | 255 |
42 | 1 | 1.67552 | 230.08 | 249.28 | 31 | 230.4 | 250.88 | 20 | INT | 11.12036 | 0.64 | 0.71552 | 0.45216 | 255 |
44 | 1 | 1.54496 | 230.4 | 250.88 | 29 | 231.36 | 250.56 | 26 | INT | 3.16607 | 0.77248 | 0.45248 | 0.36416 | 255 |
45 | 1 | 1.54496 | 273.28 | 218.24 | 28 | 273.92 | 216.96 | 23 | INT | 5.200769 | 0.99776 | 0.90496 | 0.54624 | 255 |
46 | 1 | 1.488 | 232.64 | 251.2 | 74 | 231.36 | 250.56 | 73 | TER | 1.745852 | 1.39328 | 0.32 | 0.32 | 255 |
47 | 1 | 1.41248 | 260.48 | 224.96 | 60 | 260.16 | 223.68 | 66 | TER | 6.143354 | 1.41248 | 0.64 | 0.43328 | 255 |
48 | 1 | 1.35776 | 237.76 | 242.56 | 61 | 238.72 | 243.52 | 51 | TER | 10.09174 | 1.35776 | 0.64 | 0.43328 | 255 |
49 | 1 | 1.35776 | 264 | 220.8 | 57 | 264.96 | 221.76 | 44 | TER | 13.0707 | 1.35776 | 0.64 | 0.4 | 255 |
50 | 1 | 1.35776 | 279.36 | 214.08 | 59 | 279.68 | 215.04 | 65 | TER | 6.084735 | 1.35776 | 0.71552 | 0.45184 | 255 |
51 | 1 | 1.35552 | 229.12 | 250.88 | 77 | 228.8 | 252.16 | 56 | TER | 21.04141 | 1.35552 | 0.96 | 0.53344 | 255 |
52 | 1 | 1.28 | 248 | 231.68 | 2 | 249.28 | 231.68 | 26 | INT | 24.03411 | 0.32 | 0.64 | 0.47072 | 255 |
53 | 1 | 1.22496 | 196.16 | 277.76 | 43 | 195.2 | 277.12 | 45 | TER | 2.308939 | 1.22496 | 0.96 | 0.70944 | 255 |
54 | 1 | 1.22496 | 243.52 | 239.36 | 61 | 242.56 | 238.72 | 81 | TER | 20.03325 | 1.22496 | 0.64 | 0.42656 | 255 |
55 | 1 | 1.22496 | 238.72 | 243.52 | 18 | 239.68 | 242.88 | 5 | INT | 13.0511 | 0.90496 | 0.71552 | 0.61216 | 255 |
56 | 1 | 1.22496 | 172.48 | 296.96 | 62 | 173.44 | 297.6 | 50 | TER | 12.05534 | 1.0624 | 0.96 | 0.57888 | 255 |
57 | 1 | 1.22496 | 175.68 | 297.28 | 73 | 174.72 | 296.64 | 50 | TER | 23.02892 | 1.13024 | 0.96 | 0.53344 | 255 |
58 | 1 | 1.22496 | 182.72 | 287.68 | 70 | 183.68 | 288.32 | 76 | TER | 6.109926 | 1.0624 | 0.96 | 0.56 | 255 |
59 | 1 | 1.22496 | 188.8 | 282.24 | 61 | 189.44 | 283.2 | 46 | TER | 15.04431 | 1.0624 | 1.01184 | 0.57312 | 255 |
60 | 1 | 1.22496 | 203.2 | 272 | 57 | 202.56 | 271.04 | 81 | TER | 24.02772 | 1.0624 | 1.01184 | 0.75232 | 255 |
61 | 1 | 1.22496 | 252.48 | 230.4 | 65 | 251.84 | 229.44 | 69 | TER | 4.163076 | 1.13024 | 0.64 | 0.42656 | 255 |
62 | 1 | 1.22496 | 272.96 | 216.32 | 81 | 273.92 | 216.96 | 63 | TER | 18.03694 | 1.0624 | 0.32 | 0.32 | 255 |
63 | 1 | 1.168 | 288.64 | 212.16 | 74 | 287.68 | 211.52 | 49 | TER | 25.02661 | 1.168 | 0.32 | 0.32 | 255 |
64 | 1 | 1.09248 | 179.84 | 293.44 | 82 | 178.88 | 293.12 | 74 | TER | 8.063746 | 0.99776 | 0.45248 | 0.36416 | 255 |
65 | 1 | 1.09248 | 225.92 | 255.68 | 53 | 225.28 | 255.04 | 48 | TER | 5.08126 | 0.99776 | 0.90496 | 0.60352 | 255 |
66 | 1 | 1.09248 | 288.64 | 209.6 | 65 | 288.96 | 210.56 | 46 | TER | 19.02693 | 0.97728 | 0.64 | 0.4 | 255 |
67 | 1 | 1.09248 | 249.28 | 231.68 | 23 | 249.28 | 231.68 | 18 | INT | 5 | 0.77248 | 0.64 | 0.53344 | 255 |
68 | 1 | 1.09248 | 259.2 | 223.36 | 21 | 260.16 | 223.68 | 20 | INT | 1.422674 | 0.32 | 0.64 | 0.5776 | 255 |
69 | 1 | 1.09248 | 269.76 | 218.88 | 10 | 270.72 | 219.2 | 22 | INT | 12.04259 | 0.32 | 0.64 | 0.64 | 255 |
70 | 1 | 0.90496 | 265.6 | 220.16 | 47 | 266.24 | 220.8 | 67 | TER | 20.02047 | 0.90496 | 0.64 | 0.47072 | 255 |
71 | 1 | 0.90496 | 287.04 | 210.88 | 59 | 287.68 | 211.52 | 46 | TER | 13.03147 | 0.90496 | 0.32 | 0.32 | 255 |
72 | 1 | 0.77248 | 197.12 | 273.92 | 81 | 197.44 | 274.56 | 48 | TER | 33.00776 | 0.67776 | 0.64 | 0.42656 | 255 |
73 | 1 | 0.77248 | 213.76 | 260.8 | 49 | 214.08 | 261.44 | 84 | TER | 35.00731 | 0.67776 | 0.64 | 0.42656 | 255 |
74 | 1 | 0.77248 | 230.4 | 248.64 | 43 | 230.08 | 249.28 | 74 | TER | 31.00826 | 0.81024 | 0.71552 | 0.496 | 255 |
75 | 1 | 0.77248 | 249.92 | 229.76 | 49 | 250.24 | 230.4 | 66 | TER | 17.01505 | 0.67776 | 0.64 | 0.42656 | 255 |
76 | 1 | 0.77248 | 269.44 | 218.24 | 45 | 269.76 | 218.88 | 44 | TER | 1.229634 | 0.67776 | 0.64 | 0.42656 | 255 |
77 | 1 | 0.77248 | 271.04 | 219.84 | 68 | 270.72 | 219.2 | 69 | TER | 1.229634 | 0.77248 | 0.64 | 0.48 | 255 |
78 | 1 | 0.77248 | 273.6 | 218.88 | 65 | 273.28 | 218.24 | 49 | TER | 16.01599 | 0.67776 | 0.90496 | 0.72832 | 255 |
79 | 1 | 0.77248 | 281.92 | 215.04 | 44 | 281.6 | 214.4 | 81 | TER | 37.00692 | 0.77248 | 0.45248 | 0.38624 | 255 |
80 | 1 | 0.64 | 239.36 | 241.28 | 78 | 240 | 241.28 | 60 | TER | 18.01137 | 0.64 | 0.45248 | 0.36416 | 255 |
81 | 1 | 0.45248 | 255.36 | 225.92 | 71 | 255.68 | 226.24 | 70 | TER | 1.097634 | 0.45248 | 0.32 | 0.32 | 255 |
82 | 1 | 0.45248 | 258.88 | 223.04 | 73 | 259.2 | 223.36 | 56 | TER | 17.00602 | 0.45248 | 0.45248 | 0.38624 | 255 |
83 | 1 | 0.45248 | 289.92 | 209.6 | 78 | 290.24 | 209.92 | 72 | TER | 6.017042 | 0.45248 | 0.32 | 0.32 | 255 |
84 | 1 | 0.32 | 243.2 | 235.84 | 83 | 243.52 | 235.84 | 58 | TER | 25.00205 | 0.32 | 0.64 | 0.48 | 255 |
85 | 1 | 0.32 | 247.68 | 231.68 | 74 | 248 | 231.68 | 50 | TER | 24.00213 | 0.32 | 0.32 | 0.32 | 255 |