Table 1.
BLAST search result for IS1. If there are multiple redundant hits for the same gene from different strains of the same species removed, only one hit is shown. Sequence identity is calculated as the number of identical residues divided by query length. Only the sequence portion aligned to the query is shown. In this table, we also list the closest BLAST hit from bat coronavirus RaTG13, which is known to be closely related to 2019-nCoV.3
| IS | NCBI accession |
Sequence | E- value |
Sequence Identity |
Species |
|---|---|---|---|---|---|
|
| |||||
| Query | GTNGTKR | 27 | 1.00 | 2019-nCoV | |
| APC94153 | GTNGTKR | 28 | 1.00 | uncultured marine virus | |
| AFU28737 | -TNGTKR | 224 | 0.86 | Human immunodeficiency virus 1 | |
| IS1 | AVE17137 | GTDGTKR | 224 | 0.86 | Rat astrovirus Rn/S510/Guangzhou |
| QBX18329 | -TNGTKR | 224 | 0.86 | Streptococcus phage Javan411 | |
| QHR63300 | GTNGIKR | 643 | 0.86 | Bat coronavirus RaTG13 | |
|
| |||||
| Query | YYHKNNKS | 0.13 | 1.00 | 2019-nCoV | |
| QHR63300 | YYHKNNKS | 0.13 | 1.00 | Bat coronavirus RaTG13 | |
| IS2 | AUL79732 | -YHKNNKS | 4.2 | 0.88 | Tupanvirus deep ocean |
| YP_007007173 | YYHKDNK- | 8.7 | 0.75 | Klebsiella phage vB_KleM_RaK2 | |
| ALS03575 | YYHKNN-- | 12 | 0.75 | Gokushovirus WZ-2015a | |
|
| |||||
| Query | GDSSSG | 1004 | 1.00 | 2019-nCoV | |
| QAU19544 | GDSSSG | 1003 | 1.00 | Orthohepevirus C | |
| IS3 | AYV78550 | GDSSSG | 1004 | 1.00 | Edafosvirus sp. |
| QHR63300 | GDSSSG | 1004 | 1.00 | Bat coronavirus RaTG13 | |
| QDP55596 | GDSSSG | 1004 | 1.00 | Prokaryotic dsDNA virus sp. | |
|
| |||||
| Query | QTNSPRRA | 1.0 | 1.00 | 2019-nCoV | |
| IS4 | |||||
| YP_009226728 | QTNSPRR- | 8.5 | 0.88 | Staphylococcus phage SPbeta-like | |
| BAF95810 | QTNSPRRA | 35 | 1.00 | Bovine papillomavirus type 9 | |
| ARV85991 | ETNSPRR- | 106 | 0.75 | Peach associated luteovirus | |
| QDH92312 | QTNAPRKA | 142 | 0.75 | Gordonia phage Spooky | |