Table 1. Raw, default, and BH.Q in JTK algorithm.
JTK | description | R |
---|---|---|
raw p-value | No correction | - |
default p-value | Bonferroni correction of raw p-values | p.adjust(raw.pvals, method=“bonf”) |
BH.Q (this paper) | Benjamini-Hochberg correction of raw p-values | p.adjust(raw.pvals, method=“BH”) |
BH.Q (software) | Benjamini-Hochberg correction of default p-values | p.adjust(default.pvals, method=“BH”) |