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. 2020 Mar 17;16(3):e1007666. doi: 10.1371/journal.pcbi.1007666

Table 1. Raw, default, and BH.Q in JTK algorithm.

JTK description R
raw p-value No correction -
default p-value Bonferroni correction of raw p-values p.adjust(raw.pvals, method=“bonf”)
BH.Q (this paper) Benjamini-Hochberg correction of raw p-values p.adjust(raw.pvals, method=“BH”)
BH.Q (software) Benjamini-Hochberg correction of default p-values p.adjust(default.pvals, method=“BH”)