Table 1.
Culture conditions |
Number of isolates |
Number of phylotypesa |
Shannon diversity index |
Number of novel phylotypesb |
Novelty indexc |
---|---|---|---|---|---|
Aerobic | |||||
PT | 68 | 34 | 3.26 | 5 | 0.074 |
PS | 67 | 40 | 3.09 | 13 | 0.194 |
Nitrate reduction | |||||
PT | 41 | 19 | 2.55 | 5 | 0.122 |
PS | 45 | 24 | 2.72 | 10 | 0.222 |
Fermentation | |||||
PT | 35 | 6 | 1.62 | 1 | 0.029 |
PS | 40 | 13 | 2.39 | 4 | 0.100 |
a Isolates were assigned to phylotypes based on partial 16S rRNA gene sequences, with a sequence identify cut-off value of 97%.
b Phylotypes with less than 80% classification reliability at the genus level in the RDP Classifier analysis were defined as novel.
c The novelty index was calculated as “the number of novel phylotypes/total number of isolates”.