Table 2a.
Immunogenicity (Ig) and number of aliphatic amino acids in T-cell epitopes of JEV (Hopp & Woods approach, 1981).
| Name of virus | Name of proteins | Accession number | Hexapeptide epitope | Aliphatic amino acids | Ig analysis of hexapeptide epitopes |
||
|---|---|---|---|---|---|---|---|
| Hydropathy index | Chou-Fasman conformation | Ig score | |||||
| Japanese encephalitis | E protein | NP_775666.1 | EKRADS | 2 | 6.9 | 1.04 | 7.18 |
| NEKRAD | 2 | 7.35 | 1.06 | 7.79 | |||
| GRGDKQ | 3 | 7.2 | 1.25 | 9 | |||
| KRADSS | 2 | 6.45 | 1.16 | 7.48 | |||
| NARDRS | 1 | 7 | 1.17 | 8.19 | |||
| PreM protein | NP_775664.1 | KRSRRS | 1 | 7.67 | 1.12 | 8.59 | |
| SKRSRR | 1 | 7.67 | 1.12 | 8.59 | |||
| DPEDVD | 1 | 6.4 | 1.19 | 7.62 | |||
| SKGENR | 2 | 7.27 | 1.21 | 8.8 | |||
| GNDPED | 1 | 7.17 | 1.38 | 9.89 | |||
| NS1 protein | NP_775667.1 | EESTDE | 0 | 7.08 | 1.01 | 7.15 | |
| REESTD | 0 | 7.25 | 1.05 | 7.61 | |||
| KHNRRE | 1 | 8.35 | 1.03 | 8.6 | |||
| EDCGKR | 2 | 6.72 | 1.15 | 7.73 | |||
| KECPDE | 1 | 6.75 | 1.11 | 7.49 | |||
| NS3 protein | NP_775670.1 | RGEEKK | 3 | 7.78 | 1 | 7.78 | |
| GEEKKN | 3 | 7.62 | 1.1 | 8.38 | |||
| DRQEEP | 0 | 7.85 | 1.07 | 8.4 | |||
| GDRQEE | 1 | 7.65 | 1.07 | 8.19 | |||
| GPEREK | 2 | 7.4 | 1.09 | 8.07 | |||
| NS5 protein | NP_775674.1 | DEEREN | 0 | 8.17 | 1.03 | 8.42 | |
| KREKKP | 3 | 8.05 | 1.04 | 8.37 | |||
| GKREKK | 4 | 7.85 | 1.05 | 8.24 | |||
| REKRPR | 1 | 8.25 | 1.02 | 8.42 | |||
| RRARRE | 1 | 7.78 | 0.87 | 6.77 | |||