Table 1.
Summary of the detection of astrovirus and coronavirus in bats collected from 43 sites in Lao PDR and Cambodia between 2010 and 2013.
| Country | Site | No of bat collected | No of bat tested (no of positive) | Bat genus positive | Coronavirus clustersa | No of bat tested (no of positive) | Bat genus positive | Astrovirus strainsb |
|---|---|---|---|---|---|---|---|---|
| Cambodia | 1 | 72 | 5 (1) | Sco | αCoV-1 | 72 (15) | Sco | Bat astV, cluster 8 astV |
| 2 | 24 | 24 (5) | Cyn, Mgl | βCoV-D1, βCoV-D2, βCoV-D3 | 24 (0) | – | ||
| 3 | 43 | 43 (4) | Cyn | βCoV-D2 | 43 (0) | – | ||
| 4 | 12 | 12 (0) | – | 12 (0) | – | |||
| 5 | 7 | 6 (0) | – | 7 (0) | – | |||
| 6 | 11 | 11 (0) | – | 11 (0) | – | |||
| 7 | 17 | 17 (0) | – | 17 (0) | – | |||
| 8 | 39 | 36 (0) | – | 39 (0) | – | |||
| 9 | 1 | 1 (0) | – | 1 (0) | – | |||
| 10 | 40 | 39 (0) | – | 39 (0) | – | |||
| 11 | 9 | 9 (1) | Pip | αCoV-1 | 9 (0) | – | ||
| 12 | 20 | 20 (1) | Pip | βCoV-C | 20 (0) | – | ||
| 13 | 47 | 50 (2) | Myo | αCoV-2 | 47 (20) | Myo | Bat astV | |
| 14 | 392 | 392 (28) | Sco | αCoV-1 | 390 (17) | Sco | Bat astV | |
| 15 | 112 | 112 (3) | Cyn | βCoV-D3 | 112 (0) | – | ||
| 16 | 6 | 6 (0) | – | 6 (0) | – | |||
| 17 | 53 | 53 (2) | Sco | αCoV-1 | 53 (0) | – | ||
| 18 | 17 | 17 (0) | – | 19 (0) | – | |||
| 19 | 28 | 28 (2) | Eon, Cyn | βCoV-D1, βCoV-D2 | 28 (0) | – | ||
| 20 | 16 | 16 (0) | – | 16 (0) | – | |||
| 21 | 7 | 7 (1) | Mgp | βCoV-D2 | 7 (0) | – | ||
| 22 | 14 | 14 (0) | – | 14 (0) | – | |||
| 23 | 34 | 34 (1) | Cyn | βCoV-D2 | 34 (2) | Mgd | Bat astV | |
| 24 | 59 | 59 (2) | Rhin, Rs | αCoV-4, βCoV-D2 | 59 (7) | Tph, Hip, Rhin, Rs | Bat astV, cluster7 astV | |
| 25 | 9 | 9 (0) | – | 9 (0) | – | |||
| 26 | 12 | 12 (4) | Cyn, Eon | βCoV-D1, βCoV-D2 | 12 (0) | – | ||
| 27 | 25 | 25 (4) | Cyn, Eon | βCoV-D1, βCoV-D2 | 25 (0) | – | ||
| 28 | 2 | 2 (0) | – | 2 (0) | – | |||
| Lao PDR | 29 | 3 | 3 (0) | – | 3 (0) | – | ||
| 30 | 2 | 2 (0) | – | 2 (0) | – | |||
| 31 | 32 | 32 (0) | – | 32 (1) | Ia | Bat astV | ||
| 32 | 3 | 3 (0) | – | 3 (0) | – | |||
| 33 | 281 | 281 (6) | Eon, Rs | βCoV-D1, βCoV-D3, βCoV-D4 | 131 (0) | – | ||
| 34 | 14 | 14 (0) | – | 14 (0) | – | |||
| 35 | 9 | 9 (0) | – | 9 (1) | Rs | Bat astV | ||
| 36 | 100 | 100 (3) | Eon, Rs | βCoV-D3 | 84 (9) | Eon, Rs | Bat astV, cluster7 astV | |
| 37 | 10 | 10 (0) | – | 10 (0) | – | |||
| 38 | 23 | 22 (0) | – | 23 (0) | – | |||
| 39 | 74 | 74 (2) | Hip | αCoV-4 | 33 (0) | – | ||
| 40 | 176 | 176 (17) | Eon, Rs | βCoV-D3, βCoV-D4 | 143 (12) | Eon, Rs, Rhin, Hip | Bat astV, cluster7 astV | |
| 41 | 107 | 105 (0) | – | 107 (3) | Rhin | Bat astV, cluster7 astV | ||
| 42 | 6 | 6 (1) | Rs | βCoV-D3 | 6 (0) | – | ||
| 43 | 29 | 29 (3) | Rs | βCoV-D3 | 29 (6) | Rs | Bat astV, cluster7 astV |
Hip: Hipposideros; Eon: Eonycteris; Rs: Rousettus; Rhin: Rhinolophus; Cyn: Cynopterus; Mgp: Megaerops; Mgl: Macroglossus; Mgd: Megaderma; Pip: Pipistrellus; Myo: Myotis; Sco: Scotophilus.
a
From the data previously presented in Lacroix et al. (2017a).
b
From the data previously presented in Lacroix et al. (2017b).