Skip to main content
. 2012 Jul 10;22(3):301–324. doi: 10.1016/j.thorsurg.2012.05.002

Table 3.

Recommended antimicrobial therapy for specific pathogens

Organism Preferred Antimicrobial(s) Alternative Antimicrobial(s)
Streptococcus pneumoniae
Penicillin-nonresistant; MIC<2 μg/mL Penicillin G, amoxicillin Macrolide, cephalosporins (oral [cefpodoxime, cefprozil, cefuroxime, cefdinir, cefditoren] or parenteral [cefuroxime, ceftriaxone, cefotaxime]), clindamycin, doxycycline, respiratory fluoroquinolonea
Penicillin-resistant; MIC≥2 μg/mL Agents chosen based on susceptibility, including cefotaxime, ceftriaxone, fluoroquinolone Vancomycin, linezolid, high-dose amoxicillin (3 g/d with penicillin MIC≤4 μg/mL)
Haemophilus influenzae
Non–β-lactamase–producing Amoxicillin Fluoroquinolone, doxycycline, azithromycin, clarithromycinb
β-Lactamase–producing Second- or third-generation cephalosporin, amoxicillin-clavulanate Fluoroquinolone, doxycycline, azithromycin, clarithromycinb
Mycoplasma pneumoniae/Chlamydophila pneumoniae Macrolide, a tetracycline Fluoroquinolone
Legionella spp Fluoroquinolone, azithromycin Doxycycline
Chlamydophila psittaci A tetracycline Macrolide
Coxiella burnetii A tetracycline Macrolide
Francisella tularensis Doxycycline Gentamicin, streptomycin
Yersinia pestis Streptomycin, gentamicin Doxycycline, fluoroquinolone
Bacillus anthracis (inhalation) Ciprofloxacin, levofloxacin, doxycycline (usually with second agent) Other fluoroquinolones; β-lactam, if susceptible; rifampin; clindamycin; chloramphenicol
Enterobacteriaceae Third-generation cephalosporin, carbapenemc (preferred drug if extended-spectrum
β-lactamase producer)
β-lactam/β-lactamase inhibitor,d fluoroquinolone
Pseudomonas aeruginosa Antipseudomonal β-lactame plus (ciprofloxacin or levofloxacinf or aminoglycoside) Aminoglycoside plus (ciprofloxacin or levofloxacinf)
Burkholderia pseudomallei Carbapenem, ceftazidime Fluoroquinolone, TMP-SMX
Acinetobacter spp Carbapenem Cephalosporin-aminoglycoside, ampicillin-sulbactam, colistin
Staphylococcus aureus
Methicillin-susceptible Antistaphylococcal penicilling Cefazolin, clindamycin
Methicillin-resistant Vancomycin or linezolid TMP-SMX
Bordetella pertussis Macrolide TMP-SMX
Anaerobe (aspiration) β-Lactam/β-lactamase inhibitor,d clindamycin Carbapenem
Influenza virus Oseltamivir or zanamivir
Mycobacterium tuberculosis Isoniazid plus rifampin plus ethambutol plus pyrazinamide Refer to Ref.57 for specific recommendations
Coccidioides spp For uncomplicated infection in a normal host, no therapy generally recommended; for therapy, itraconazole, fluconazole Amphotericin B
Histoplasmosis Itraconazole Amphotericin B
Blastomycosis Itraconazole Amphotericin B

Choices should be modified based on susceptibility test results and advice from local specialists. Refer to local references for appropriate doses.

Abbreviations: MIC, minimum inhibitory concentration; TMP-SMX, trimethoprim-sulfamethoxazole.

a

Levofloxacin, moxifloxacin, gemifloxacin (not a first-line choice for penicillin susceptible strains); ciprofloxacin is appropriate for Legionella and most gram-negative bacilli (including H influenza).

b

Azithromycin is more active in vitro than clarithromycin for H influenza.

c

Imipenem-cilastatin, meropenem, ertapenem.

d

Piperacillin-tazobactam for gram-negative bacilli; ticarcillin-clavulanate, ampicillin-sulbactam, or amoxicillin-clavulanate.

e

Ticarcillin, piperacillin, ceftazidime, cefepime, aztreonam, imipenem, meropenem.

f

750 mg/d.

g

Nafcillin, oxacillin flucloxacillin.

From Mandell LA, Wunderink RG, Anzueto A, et al. Infectious Diseases Society of America/American Thoracic Society consensus guidelines on the management of community-acquired pneumonia in adults. Clin Infect Dis 2007;44:S27–72; with permission.