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. 2010 May 1;10(6):797–803. doi: 10.1016/j.meegid.2010.04.010

Table 2.

Identified ORFs (length > 250 bps) in the PRRSV (13 isolates) genome.

ORF No. A% A3% U% U3% C% C3% G% G3% (C + G)% (C3 + G3)%
1a 1 20.45 16.35 24.96 28.13 27.24 32.16 27.36 23.34 54.59 55.51
2 20.42 16.00 25.04 29.35 26.98 31.25 27.57 23.37 54.55 54.63
3 20.46 16.18 25.04 28.36 27.24 32.02 27.26 23.41 54.50 55.44
4 20.11 16.64 26.83 32.02 27.55 31.10 25.50 20.22 53.05 51.33
5 20.84 17.17 25.09 28.19 27.02 31.68 27.05 22.95 54.07 54.63
6 20.47 16.13 25.08 28.41 27.21 32.02 27.25 23.41 54.45 55.44
7 20.76 17.04 25.70 29.59 26.55 30.51 26.99 22.84 53.53 53.35
8 20.83 17.22 25.06 28.3 27.05 31.76 27.06 23.07 54.11 54.84
9 20.04 16.60 26.81 32.25 27.67 31.07 25.48 20.07 53.15 51.13
10 19.97 16.63 26.66 31.57 27.78 31.48 25.59 20.31 53.37 51.79
11 19.76 16.71 26.91 31.82 27.72 31.48 25.61 19.97 27.72 51.45
12 19.90 16.29 26.91 32.31 27.56 31.45 25.63 19.93 53.19 51.39
13 19.69 16.23 26.65 31.55 27.71 31.34 25.94 20.86 53.65 52.20



1b 1 23.42 17.46 23.58 26.16 27.67 34.72 25.34 21.64 53.00 56.36
2 23.52 17.23 23.77 28.10 27.21 32.83 25.50 21.82 52.71 54.66
3 23.46 17.62 23.82 26.75 27.37 34.11 25.35 21.51 52.72 55.62
4 23.62 19.54 24.26 28.39 26.91 30.45 25.20 21.60 52.11 52.05
5 23.77 18.29 24.09 27.61 27.12 33.47 25.02 20.62 52.14 54.09
6 23.62 17.90 23.82 26.96 27.37 33.82 25.19 21.30 52.56 55.13
7 23.38 18.05 24.41 28.7 26.87 32.22 25.34 21.01 52.21 53.24
8 23.92 18.21 24.08 27.64 27.19 33.54 24.82 20.59 52.01 54.13
9 23.65 18.61 23.78 26.68 27.48 32.55 25.09 22.15 52.57 54.70
10 23.86 19.88 23.88 27.50 27.35 31.31 24.91 21.29 52.25 52.60
11 23.68 19.30 24.02 27.48 27.21 31.43 25.09 21.77 52.30 53.20
12 23.77 19.46 23.95 27.22 27.25 31.59 25.02 21.72 52.28 53.31
13 23.68 19.60 23.63 26.09 27.39 32.15 27.39 22.14 52.69 54.30



2 1 21.27 22.97 32.43 35.31 22.96 20.00 23.35 21.70 46.30 41.70
2 20.88 21.27 32.22 34.89 23.22 20.85 23.22 22.97 46.43 43.82
3 20.88 22.12 32.30 35.31 22.96 19.57 23.87 22.97 46.82 42.55
4 19.60 18.88 29.47 28.32 26.93 29.61 24.00 23.17 50.93 52.78
5 19.58 19.65 32.17 35.04 23.22 20.51 25.03 24.78 48.25 45.29
6 20.88 22.12 32.68 36.17 22.96 19.57 23.48 22.12 46.43 41.70
7 20.75 22.12 32.17 33.61 23.61 22.55 23.48 21.70 47.08 44.25
8 19.58 19.65 32.17 35.04 23.22 20.51 25.03 24.78 48.25 45.29
9 20.53 20.17 30.00 28.32 26.40 29.61 23.07 21.88 49.47 51.50
10 19.47 18.88 29.60 27.46 26.93 30.47 24.00 23.17 50.93 53.64
11 19.20 18.10 29.73 28.44 27.07 30.17 24.00 23.27 51.07 53.44
12 20.27 21.45 30.00 29.18 26.80 29.18 22.93 20.17 49.73 49.00
13 20.00 21.03 30.27 28.32 26.13 29.61 23.60 21.03 49.73 53.00



3 1 20.00 16.73 29.28 28.97 26.01 31.83 24.71 22.44 50.72 54.28
2 20.52 16.04 29.28 30.86 26.14 33.33 24.05 19.75 50.20 53.08
3 20.52 17.55 29.15 28.97 26.14 32.24 24.18 21.22 50.33 53.46
4 22.06 19.92 28.32 27.09 26.82 31.87 22.81 21.11 49.62 52.98
5 19.08 15.51 28.89 28.97 26.67 33.06 25.36 22.44 52.03 55.51
6 20.78 17.14 23.92 29.38 29.28 31.83 26.01 21.63 49.93 53.46
7 18.90 14.40 29.00 30.45 26.90 33.33 25.20 21.81 52.10 55.14
8 19.08 15.51 28.89 28.97 26.67 33.06 25.36 22.44 52.03 55.51
9 23.18 20.15 27.57 26.48 26.94 33.59 22.31 19.76 49.25 53.35
10 21.18 17.39 27.57 26.48 27.44 32.01 23.81 24.11 51.25 56.12
11 21.32 18.36 29.20 28.57 27.13 31.02 22.35 22.04 49.48 53.06
12 22.09 20.32 28.29 27.23 27.52 32.11 22.09 20.32 49.61 52.43
13 21.19 18.36 28.17 26.12 27.52 33.87 23.13 21.63 50.65 55.51



4 1 19.93 13.37 31.66 35.46 24.77 29.65 23.65 21.51 48.42 51.16
2 20.30 13.95 31.66 30.23 24.77 36.04 23.28 19.76 48.04 55.81
3 20.30 13.37 23.28 35.46 31.66 29.65 24.77 21.51 48.04 51.16
4 22.28 14.77 28.80 31.81 26.63 30.68 22.28 22.72 48.91 53.40
5 19.18 12.20 31.10 33.72 25.70 31.97 24.02 22.09 49.72 54.06
6 20.11 13.37 23.65 34.88 31.28 30.23 24.95 21.51 48.60 51.74
7 20.48 15.11 30.35 30.81 26.63 34.88 22.53 19.18 49.16 54.06
8 19.18 12.20 31.10 33.72 25.70 31.97 24.02 22.09 49.72 54.06
9 22.64 15.34 27.17 26.7 28.26 34.65 21.92 23.29 50.18 57.95
10 21.38 14.77 28.44 30.68 26.99 31.81 23.19 22.72 50.18 54.54
11 21.21 14.28 29.73 30.95 26.70 32.14 22.35 22.61 49.05 54.76
12 20.83 12.94 29.55 32.94 26.52 29.41 23.11 24.70 49.62 54.11
13 21.02 13.60 29.55 31.36 26.33 30.76 23.11 24.26 49.43 55.02



5 1 20.23 13.54 29.68 30.72 24.05 34.37 26.04 21.35 50.08 55.72
2 20.07 11.97 29.35 30.20 24.71 33.33 25.87 24.47 50.58 57.81
3 20.40 13.54 25.87 30.72 29.35 34.37 24.38 21.35 50.25 55.72
4 20.46 15.10 29.54 30.2 24.26 35.93 25.74 18.75 50.00 54.68
5 20.07 13.54 30.02 30.2 23.22 32.29 26.70 23.95 49.92 56.25
6 20.40 13.54 29.35 30.72 24.38 34.37 25.87 21.35 50.25 55.72
7 19.90 12.50 30.51 32.29 23.05 31.25 26.53 23.95 49.59 55.20
8 20.07 13.54 30.02 30.20 23.22 32.29 26.70 23.95 49.92 56.25
9 19.64 13.54 28.22 26.56 25.58 37.50 26.57 22.39 52.15 59.89
10 20.13 17.18 27.72 25.52 25.91 39.58 26.24 17.70 52.15 57.29
11 21.62 17.70 28.22 28.12 25.25 35.93 24.92 18.00 50.17 54.16
12 19.47 13.98 28.88 29.53 24.59 35.23 27.06 22.00 51.65 56.47
13 21.78 16.31 29.54 31.57 22.77 31.57 25.91 20.52 48.68 52.10



6 1 22.29 17.85 26.29 23.21 25.90 34.52 25.52 24.40 51.43 58.92
2 22.67 19.64 26.48 24.40 25.71 32.73 25.14 23.21 50.86 55.95
3 22.67 19.64 26.48 24.40 25.71 32.73 25.14 23.21 50.86 55.95
4 23.37 27.38 25.48 23.21 27.01 33.92 24.14 15.47 51.15 49.40
5 21.52 17.85 27.05 26.19 24.95 30.95 26.48 25.00 51.43 55.95
6 22.67 19.64 26.48 24.40 25.52 33.33 25.33 22.61 50.86 55.95
7 22.29 19.04 26.48 23.80 25.52 33.33 25.71 23.80 51.24 57.14
8 21.52 17.85 27.05 26.19 24.95 30.95 26.48 25.00 51.43 55.95
9 22.03 24.40 26.05 24.40 26.25 32.14 25.67 19.04 51.92 51.19
10 23.37 26.19 26.63 25.59 25.86 31.54 24.14 16.66 50.00 48.21
11 24.52 14.28 25.29 30.95 26.63 32.14 23.56 22.61 50.19 54.76
12 21.84 22.75 25.86 20.95 26.63 37.12 25.67 19.16 52.30 56.28
13 22.80 23.95 27.01 26.94 25.10 30.53 25.10 18.56 50.19 49.10



7 1 30.11 19.00 19.09 23.96 25.27 23.96 25.54 33.05 50.81 57.02
2 30.11 19.83 19.35 21.48 24.73 24.79 25.81 33.88 50.54 58.67
3 30.11 19.00 19.35 24.79 25.00 23.14 25.54 33.05 50.54 56.19
4 27.65 20.16 19.90 25.80 26.10 22.48 26.36 31.45 52.45 54.03
5 30.38 19.00 19.09 23.14 25.81 25.61 24.73 32.23 50.54 57.85
6 30.11 19.00 19.35 24.79 25.00 23.14 25.54 33.05 50.54 56.19
7 29.03 19.00 18.28 19.83 25.81 26.44 26.88 34.71 52.69 59.82
8 30.38 19.00 19.09 23.14 25.81 25.61 24.73 32.23 50.54 57.85
9 28.17 20.16 21.19 25.80 25.32 23.38 25.32 30.64 50.65 54.03
10 27.39 19.35 19.90 25.00 26.61 24.19 20.10 31.45 52.71 55.64
11 27.39 21.13 19.90 26.82 26.61 23.57 26.10 28.45 52.71 52.03
12 26.36 18.69 20.16 29.26 27.13 25.20 26.36 31.70 53.49 56.91
13 27.13 17.74 20.93 28.22 25.32 20.96 26.61 33.06 51.94 54.03