Table 1.
Details of the sequences obtained during the FMDV outbreak in 2007 in United Kingdom.
| Viruses | Infected Premise (IP) | Specimen1 | Animal | Species | Oldest lesion age2 |
Collection date | References | GenBank | |
|---|---|---|---|---|---|---|---|---|---|
| Animal | Infected premise | ||||||||
| IAH2 | IP0 | CC | – | – | – | – | – | Cottam et al. (2008b) | EU448369 |
| MAH | IP0 | CC | – | – | – | – | – | EU448370 | |
| UKG/7/2007 | IP1b | ES | IP1b_1 | Cattle | 8 | 10 | 03/08/2007 | Cottam et al. (2008b) | EU448371 |
| UKG/7B/2007 | IP1b | ES | IP1b_1 | Cattle | 8 | 10 | 04/08/2007 | Cottam et al. (2008b) | EU448372 |
| UKG/9/2007 | IP1b | ES | IP1b_2 | Cattle | 7 | 10 | 03/08/2007 | This work | KJ560276 |
| UKG/11/2007 | IP1b | ES | IP1b_3 | Cattle | 8 | 10 | 03/08/2007 | This work | KJ560277 |
| UKG/13/2007 | IP1b | Blood | IP1b_4 | Cattle | 3 | 10 | 03/08/2007 | This work | KJ560278 |
| UKG/32/2007 | IP1b | Blood | IP1b_5 | Cattle | 5 | 10 | 03/08/2007 | This work | KJ560279 |
| UKG/91/2007 | IP2b | ES | IP2b_1 | Cattle | 6 | 7 | 06/08/2007 | This work | KJ560280 |
| UKG/92/2007 | IP2b | ES | IP2b_2 | Cattle | 6 | 7 | 06/08/2007 | This work | KJ560281 |
| UKG/93/2007 | IP2b | ES | IP2b_3 | Cattle | 6 | 7 | 06/08/2007 | Cottam et al. (2008b) | EU448373 |
| UKG/94/2007 | IP2b | ES | IP2b_4 | Cattle | 5 | 7 | 06/08/2007 | This work | KJ560282 |
| UKG/95/2007 | IP2b | ES | IP2b_5 | Cattle | 6 | 7 | 06/08/2007 | This work | KJ560283 |
| UKG/96/2007 | IP2b | Blood | IP2b_1 | Cattle | 6 | 7 | 06/08/2007 | This work | KJ560284 |
| UKG/97/2007 | IP2b | Blood | IP2b_2 | Cattle | 6 | 7 | 06/08/2007 | This work | KJ560285 |
| UKG/132/2007 | IP2c | Blood | IP2c_1 | Cattle | None | None | 07/08/2007 | This work | KJ560286 |
| UKG/150/2007 | IP2c | Blood | IP2c_2 | Cattle | None | None | 07/08/2007 | Cottam et al. (2008b) | EU448374 |
| UKG/158/2007 | IP2c | Blood | IP2c_3 | Cattle | None | None | 07/08/2007 | This work | KJ560287 |
| UKG/642/2007 | IP3b | ES | IP3b_1 | Cattle | 2 | 5 | 12/09/2007 | This work | KJ560288 |
| UKG/643/2007 | IP3b | ES | IP3b_2 | Cattle | 4–5 | 5 | 12/09/2007 | Cottam et al. (2008b) | EU448375 |
| UKG/644/2007 | IP3b | ES | IP3b_3 | Cattle | 4–5 | 5 | 12/09/2007 | This work | KJ560289 |
| UKG/645/2007 | IP3b | ES | IP3b_4 | Cattle | 2–3 | 5 | 12/09/2007 | This work | KJ560290 |
| UKG/647/2007 | IP3b | Blood/serum | IP3b_1 | Cattle | 2 | 5 | 12/09/2007 | This work | KJ560291 |
| UKG/648/2007 | IP3b | Blood/serum | IP3b_2 | Cattle | 4–5 | 5 | 12/09/2007 | This work | KJ560292 |
| UKG/649/2007 | IP3b | Blood/serum | IP3b_3 | 2–3 | 5 | 12/09/2007 | This work | KJ560293 | |
| UKG/650/2007 | IP3b | Blood/serum | IP3b_4 | Cattle | 2–3 | 5 | 12/09/2007 | This work | KJ560294 |
| UKG/1153/2007 | IP3c | ES | IP3c_1 | Cattle | ND | 5 | 15/09/2007 | Cottam et al. (2008b) | EU448376 |
| UKG/1170/2007 | IP3c | Blood | IP3c_2 | Cattle | ND | 5 | 15/09/2007 | This work | KJ560295 |
| UKG/800/2007 | IP4b | ES | IP4b_1 | Cattle | 7 | 10 | 13/09/2007 | Cottam et al. (2008b) | EU448377 |
| UKG/805/2007 | IP4b | ES | IP4b_2 | Cattle | 8 | 10 | 13/09/2007 | This work | KJ560296 |
| UKG/1418/2007 | IP5 | O/PS | IP5_1 | Sheep | ND | 21 | 17/09/2007 | This work | KJ560297 |
| UKG/1419/2007 | IP5 | O/PS | IP5_2 | Sheep | ND | 21 | 17/09/2007 | This work | KJ560298 |
| UKG/1421/2007 | IP5 | O/PS | IP5_3 | Sheep | ND | 21 | 17/09/2007 | Cottam et al. (2008b) | EU448378 |
| UKG/1425/2007 | IP5 | O/PS | IP5_4 | Sheep | ND | 21 | 17/09/2007 | This work | KJ560290 |
| UKG/1426/2007 | IP5 | O/PS | IP5_5 | Sheep | ND | 21 | 17/09/2007 | This work | KJ560300 |
| UKG/1484/2007 | IP6b | ES | IP6b_1 | Cattle | 4 | 4 | 21/09/2007 | Cottam et al. (2008b) | EU448379 |
| UKG/1485/2007 | IP6b | ES | IP6b_1 | Cattle | 4 | 4 | 21/09/2007 | This work | KJ560301 |
| UKG/1488/2007 | IP6b | Serum | IP6b_1 | Cattle | 4 | 4 | 21/09/2007 | This work | KJ560302 |
| UKG/1679/2007 | IP7 | ES | IP7_1 | Cattle | 2 | 5 | 24/09/2007 | Cottam et al. (2008b) | EU448380 |
| UKG/1684/2007 | IP7 | ES | IP7_2 | Cattle | 3 | 5 | 24/09/2007 | This work | KJ560303 |
| UKG/1693/2007 | IP7 | Blood | IP7_1 | Cattle | 2 | 5 | 24/09/2007 | This work | KJ560304 |
| UKG/1694/2007 | IP7 | Blood | IP7_3 | Cattle | 2 | 5 | 24/09/2007 | This work | KJ560305 |
| UKG/1698/2007 | IP7 | Blood | IP7_2 | Cattle | 3 | 5 | 24/09/2007 | This work | KJ560306 |
| UKG/1701/2007 | IP7 | Blood | IP7_4 | Cattle | 3 | 5 | 24/09/2007 | This work | KJ560307 |
| UKG/1704/2007 | IP7 | Blood | IP7_5 | Cattle | 1 | 5 | 24/09/2007 | This work | KJ560308 |
| UKG/1709/2007 | IP7 | Blood | IP7_3 | Cattle | 2 | 5 | 24/09/2007 | This work | KJ560309 |
| UKG/2366/2007 | IP8 | ES | IP8_1 | Cattle | 2 | 2 | 29/09/2007 | Cottam et al. (2008b) | EU448381 |
1
CC = cell culture; ES = epithelium suspension; O/PS = oesophageal/pharyngeal scrapings (probangs).
2
ND = not determined.