Table 2.
Strains included in the phylogenetic analysis of the partial RNA-dependent RNA polymerase (RdRp) and S genes according to species (quail or pheasant), clinical signs at the sampling time and sample.
| Strain | Host | Signs | Sample | Gene | GenBank accession number |
|---|---|---|---|---|---|
| Quail01/CS/F1 | Quail | N/S | Cloacal swab | RDRP | KX077965 |
| Quail01/CS/F1 | Quail | N/S | Cloacal swab | S | KX077959 |
| Quail06/CS/F1 | Quail | N/S | Cloacal swab | RDRP | KX077966 |
| Quail06/CS/F1 | Quail | N/S | Cloacal swab | S | KX077960 |
| Quail21/CS/F1 | Quail | N/S | Cloacal swab | RDRP | KX077967 |
| Quail21/CS/F1 | Quail | N/S | Cloacal swab | S | KX077961 |
| Quail22/TS/F1 | Quail | N/S | Tracheal swab | RDRP | KX077968 |
| Quail22/TS/F1 | Quail | N/S | Tracheal swab | S | KX077962 |
| Quail38/CS/F1 | Quail | Ent | Cloacal swab | RDRP | KX077969 |
| Quail11/TS/F2 | Quail | Ent | Tracheal swab | RDRP | KX077969 |
| Quail11/TS/F2 | Quail | Ent | Tracheal swab | S | KX077963 |
| Quail30/CS/F4 | Quail | Ent | Cloacal swab | RDRP | KX077971 |
| Quail32/CS/F4 | Quail | Ent | Cloacal swab | RDRP | KX077972 |
| Pheasant01/INT/F6 | Pheasant | Ent | Intestine | RDRP | KX077973 |
| Pheasant02/INT/F6 | Pheasant | Ent | Intestine | RDRP | KX077974 |
| Pheasant03/INT/F6 | Pheasant | Ent | Intestine | RDRP | KX077975 |
| Pheasant02/INT/F6 | Pheasant | Ent | Intestine | S | KX077964 |
Ent = Enteric.
N/S = Not signs.