Table 5.
Extent of the burn-in phase. Summary of the extent of the burn-in phase (measured in samples; e.g., 100 samples correspond to 10,000 generations). We show results for the overall best performing word length k under each alphabet A for the Bayesian phylogenetic inference from K-mers with a binary encoding (B-bin).
| Synthetic data set |
|
k | Upper quartile | Median | Lower quartile |
|---|---|---|---|---|---|
| Control | AA | 3 | 176 | 149 | 126 |
| CE | 4 | 152 | 129 | 108 | |
| ASRV | AA | 3 | 158 | 132 | 110 |
| CE | 4 | 141 | 117 | 96 | |
| Short- | AA | 3 | 119 | 99 | 82 |
| sequences | CE | 4 | 106 | 88 | 72 |