Table 1.
Haplotype comparison of SARS CoV strains from Hong Kong and two transitory genotypes.
| Nucleotide position1 | Isolate (GenBank accession no.) | Amino acid | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Linked to Metropole Hotel | Transitory | Not linked to Metropole Hotel | ||||||||||||||||||
| Tor2 (AY274119) | Urbani (AY278741) | SIN2500 (AY283794) | CUHK-Su10 (AY282752) | CUHK-L2 (AY443086–AY443095) | CUHK-W1 (AY278554) | BJ01 (AY278488) | BJ02 (AY278487) | BJ03 (AY278490) | GZ01 (AY278489) | |||||||||||
| 94042 | T | T | T | T | T | C | C | C | C | C | T, valine; C, alanine | |||||||||
| 175642 | T | T | T | T | G | G | G | G | G | G | T, aspartic acid; G, glutamic acid | |||||||||
| 19838 | A | A | A | A | A | A | G | G | G | G | Silent | |||||||||
| 21721 | G | G | G | G | A | A | A | A | A | A | G, glycine; A, aspartate | |||||||||
| 222222 | T | T | T | T | C | C | C | C | C | C | T, isoleucine; C, threonine | |||||||||
| 27243 | C | C | C | C | C | C | T | T | T | T | C, proline; T, leucine | |||||||||
| 278272 | T | T | T | T | C | C | C | C | C | C | Noncoding | |||||||||
1
Nucleotide positions are stated in reference to the Tor2 sequence.
2
Part of the four-nucleotide haplotype reported by Ruan et al. (10).